Pathogen NGS Documentary

Nextstrain build for mpox virus

Official place for proposals and details around monkeypox virus lineage designations

mGEMS Genomic epidemiology with mixed samples

Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023

BA.2.86 project with Sigal lab

Efficiently store FASTA sequences in sqlite compressed with sidecar zstd dictionary

Data used for analyses in "Genomic Surveillance Reveals Multiple Introductions of SARS-CoV-2 into Northern California" (Deng et al., Science, 2020) https://doi.org/10.1126/science.abb9263

Scripts and data for the CoVaRR-Net Pillar 6 notebook

Automated genomic analysis of SARS-CoV-2 sequence data

Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite

A GLUE project for Rabies Virus (RABV).

Dr. Buqing Yi

Gallery for GEViT Project

Cluster Investigation & Virus Epidemiology Tool