aleskunder / topology_loop_caller Star 3 Code Issues Pull requests Discussions Chromatin loop caller using Topological Data Analysis based on Hi-C data bioinformatics hi-c chromatin persistent-homology topological-data-analysis bioinformatics-tool chromatin-loops hic-analysis Updated Apr 9, 2024 Python
Gabrielstav / mastercode Star 3 Code Issues Pull requests Code for my Master project pipeline data-visualization python3 hi-c chromatin-interaction edgelist pre-processing network-biology hic-analysis hic-network-analysis Updated Jul 5, 2024 Python
Gabrielstav / HiEdge Star 3 Code Issues Pull requests Configurable Hi-C pipeline that is easy to use bioinformatics-pipeline hi-c hic hic-analysis Updated Aug 21, 2024 Python
cosmoskaluga / optimalTAD Star 2 Code Issues Pull requests Topologically Associating Domain optimal set prediction using Armatus software bioinformatics-pipeline tads chip-seq-data hic-analysis armatus Updated Dec 5, 2024 Python