QuPath - Open-source bioimage analysis for research

Collection of mathematical morphology methods and plugins for ImageJ

sciview is a tool for visualization and interaction with ND image and mesh data

KNIME Image Processing Extension

Detect ridges / lines with imagej

The ImageJ framework for quantification of neuronal anatomy

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

Z-stack Depth Colorcode ImageJ FIJI plugin

Plugins for bone image analysis

Visual ImageJ Macro editing in a node-base editor featuring ImageJ

Java/ImageJ implementation of Zhang's camera calibration method

Image processing software for textbooks by W. Burger & M. Burge

Microscope control and image acquisition integrated with ImageJ.

ijp-toolkit general purpose plugins for ImageJ (also known as ij-plugins_toolkit)

Detection of Molecules plugin for ImageJ, Utrecht University

Non local means filter for ImageJ

This is a plugin for ImageJ2 for multifractal analysis of 2D and 3D images. Cite: MULTIFRAC: An ImageJ plugin for multiscale characterization of 2D and 3D stack images . IG Torre, R. J. Heck and AM Tarquis. SoftwareX, 12, 100574.

Modular, object-based analysis for ImageJ/Fiji

ImageJ library to detect and analyse connected components (blobs) in binary images

🔬 This is an ImageJ or Fiji plugin to identify, characterize, quantify and classify cells according to user-defined conditions.