circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
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Updated
Aug 9, 2024 - Nextflow
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Using RNA-Seq data to improve microRNA target prediction accuracy in animals
A command line version of the psRNATarget workflow that predicts potential miRNA target locations on a genome.
miRSM: Inferring miRNA sponge modules by integrating expression data and miRNA-target binding information
Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data
Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis
My Final Year Project - miRNA Target Prediction by adapting it to Next Sentance Prediction and assessing the performance of SOTA NLP architectures on the problem.
Web application for accessing data generated by FilTar
Database of pairwise consensuses for miR-mRNA target interactions
Masters' thesis: Construction & analysis of miRNA-RAB sub-networks in human RAB associated disorders- A network biology approach
R package for retrieving miRNA data from the web
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