CLARINET (CLARIfying NETworks) is a tool that equips modelers with a fast and reliable assistant to select the most relevant knowledge about the systems being modeled using graph-based approaches and literature occurrence metadata.

Primer proyecto individual de HENRY

VIOLIN (Validating Interactions Of Likely Importance to the Network) is a tool used to automatically classify and judge literature-extracted interactions curated from machine readers by comparing them to existing models. This comparison can help identify key interactions for model extension.

ACCORDION (ACCelerating and Optimizing model RecommenDatIONs) is a novel tool and methodology for rapid model assembly by automatically extending and evaluating dynamic network models with the information published in literature.

FIDDLE (Finding Interactions using Diagram Driven modeL Extension) is a tool to automatically assemble or extend models with the knowledge extracted from published literature. The two main methods developed as part of FIDDLE are called Breadth First Addition (BFA) and Depth First Addition (DFA), and they are based on network search algorithms.