Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

A simple simulation in Unity, which uses genetic algorithm to optimize forces applied to cubes

A simple ecosystem simulation written in Rust and Bevy

Pinpoints the mutation favored by selection

Genome-wide scan for balancing selection using beta statistic

Automated and distributed population genetic model inference from allele frequency spectra

Our project is a non-predictable, highly engaging, modern designed, educational, environment-based, data processing, visually represented, 3D-based, mutation-based, interactive, natural selection simulator with a great ease of use

Program for estimating dN/dS in overlapping genes (OLGs)

Open-ended natural selection of interacting code-data-dual algorithms as a property analogous to Turing completeness.

A 3D simulation of natural processes within a small ecosystem, such as evolution and natural selection.

Code and data for: James ME et al. (2021) Highly replicated evolution of parapatric ecotypes. Molecular Biology and Evolution. 38(11), 4805-4821.

Genetic Based Selection Forced Reinforcement Learning

Interactive game to simulate emergence and natural selection in biological systems

Sapiogenesis is a project designed to simulate the process of natural selection and evolution in physical bodies as well as neural networks through the process of random mutations and Reinforcement Learning. This allows simulated organisms to learn and make decisions based off past experiences.

The ENSL website. http://ensl.org

A natural selection simulation where blobs compete and evolve depending on environment

Code for the paper "Human capital mediates natural selection in contemporary humans"

Estimation of natural selection and allele age from time series allele frequency data using a novel likelihood-based approach

A codeml (PAML package) wrapper to make life easier. Dummy input unaligned multi-species fasta file (a single gene), and output codeml result.

Collection of code inspired by the series of youtube videos by Primer