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ncbi-pathogens

Here are 2 public repositories matching this topic...

CFSAN-Biostatistics / bettercallsal

Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.

nextflow metagenomics salmonella nextflow-pipelines ncbi-pathogens quasi-metagenomics

Updated Sep 11, 2024
Nextflow

Jtrachsel / pdtools

Functions for working with NCBI's Pathogen Detection data

bioinformatics r comparative-genomics pangenomics bacterial-genomes pathogenomics pathogen-detection ncbi-pathogens

Updated Apr 2, 2024
R

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