Get L. pneumophila ST from long-read or hybrid assemblies.
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Updated
Jul 18, 2023 - Python
Get L. pneumophila ST from long-read or hybrid assemblies.
Benchmarking for long-reads assembler
Analyses of Penter, Borji & Nagler et al., Nature Communications 2024
Generates simulated ONT metegenomic samples based off existing microbiome sample abundances
CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.
Build highly accurate transcripts from long-read RNA data
The analysis of shotgun metagenomic sequencing data generated from Oxford Nanopore Technology (ONT).
Magnipore: Differential single nucleotide changes of ONT signals
Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies
Wrapper to read fast5 and pod5 files.
A comprehensive DNA methylation atlas for the Chinese population through nanopore long-read sequencing of 106 individuals
Clair3-RNA - a long-read small variant caller for RNA sequencing data
SMIS: Single Molecular Integrative Scaffolding. A pipeline for scaffolding genome assemblies using long reads (PacBio, ONT)
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