RAxML Next Generation: faster, easier-to-use and more flexible
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Dec 11, 2024 - C++
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phylogenetics
Here are 37 public repositories matching this topic...
Efficient phylogenomic software by maximum likelihood
phylogenetics model-selection mixture-model maximum-likelihood phylogenomics iq-tree ultrafast-bootstrap
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Nov 4, 2021 - C++
Ultrafast Sample Placement on Existing Trees
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Nov 22, 2024 - C++
Version 5 of the CAFE phylogenetics software
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Nov 15, 2024 - C++
phylogenetics tools for linux (and other mostly posix compliant) computers
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Oct 21, 2024 - C++
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
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Apr 7, 2021 - C++
Massively parallel phylogenetic placement of genetic sequences
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Aug 23, 2022 - C++
A library for working with phylogenetic and population genetic data.
c-plus-plus phylogenetic-trees phylogenetics population-genetics evolutionary-placement phylogenetic-data placement pool-sequencing phylogenetic-placements
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Dec 17, 2024 - C++
A toolkit for analyzing and visualizing phylogenetic (placement) data
c-plus-plus phylogenetics genesis evolutionary-placement phylogenetic-data placement phylogenetic-placement gappa
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Jun 28, 2024 - C++
♥ Fast and Accurate Estimation of Evolutionary Distances
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May 11, 2024 - C++
Sequential Tree Sampler for online phylogenetics
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Mar 19, 2019 - C++
R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)
tree cran bioinformatics comparison phylogenetic-trees phylogenetics research-tool quartet quartet-distance
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Dec 16, 2024 - C++
Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees
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Mar 26, 2019 - C++
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
hmm phylogenetics mixture-model dirichlet-process-mixtures taxonomy-assignment otu phylogenetic-placement jplace
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Dec 2, 2024 - C++
Tools for analyzing and comparing SARS-CoV-2 phylogenies
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Nov 21, 2020 - C++
BayesCode, a Bayesian framework for phylogenetic comparative methods and phylogenetic codon models
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Oct 27, 2023 - C++
An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data
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Jan 5, 2023 - C++
A Bayesian Phylo-HMM for B cell receptor sequence analysis
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Mar 1, 2024 - C++
Phylogenetic Diversity calculations, simulations, and Discovery.
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Aug 14, 2018 - C++
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