A tool for the spatial analysis of diversity
Ancestral character reconstruction and visualisation for rooted phylogenetic trees
Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time-animated visualization.
Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
Scripts for file processing and analysis in phylogenetics and phylogeography
aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.
Scripts in R for Landscape Genomics Analyses v.2
Phylogeographic workflow using sliding-windows, RAxML-NG and FastTree
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
Genomic Epidemiology of SARS-CoV-2 in Pakistan
Phylogeographical analyses of SARS-CoV-2 variants of concern in Norway
Tracking the spread of Foot-and-Mouth Disease virus in South America
Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'
Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE
Nextstrain community build 'Molecular epidemiology of Chikungunya virus'
Plague Global Phylogeny Manuscript
Supporting code for a study on the phylogeography of the common garter snake Thamnophis sirtalis
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