This is the development home of the workflow management system Snakemake. For general information, see

⛔ ARCHIVED ⛔

Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.

Increase citations, ease review & collaboration A collection of "easy wins" to make machine learning in research reproducible. This tutorial focuses on basics that work. Getting you 90% of the way to top-tier reproducibility.

The Organization lesson for the Reproducible Science Curriculum

Coding Standards for the USC Biostats group

Code related to Neuroimaging Analysis Replication and Prediction Study

FORRT Website

This package allows R code chunks, which can be tested for reproducibility.

Template for using mlr3 with drake

Examples and demos for ReproZip

Resources for automation tutorials

Reprohack django site

Website about the project WorkflowHub

Website for Initiative "Reproducible Research" @ AGILE conference

Introduction materials for Reproducible Research Curriculum

paleoMAT: Paleotemperature Reconstruction from Pollen using the Modern Analog Technique

R package to simplify workflows of D6 research projects. The package provides utilities to set up a standardized folder structure and version control, and Rmarkdown templates and rendering functionality for a reproducible workflow.

quick lessons for reproducible research practices

Example code for a possible talk at R/Medicine 2021 (submitted and under review, accepted talks not yet determined)