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SBML

SBML (the Systems Biology Markup Language) is an XML-based format for communicating and storing representations of biological processes. Its aim is to be a lingua franca for representing models in biology. SBML is suitable for models commonly found in research on a number of topics, including cell signaling pathways, metabolic pathways, biochemical reactions, gene regulation, and many others.

Here are 6 public repositories matching this topic...

SciML / SBMLToolkit.jl

SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit

julia systems-biology ode differential-equations chemical-reaction-networks sbml gillespie-algorithm quantitative-systems-pharmacology sciml

Updated Dec 12, 2024
Julia

LCSB-BioCore / SBML.jl

Julia interface to the Systems Biology Markup Language (SBML) library

modeling systems-biology cobra libsbml sbml

Updated Nov 22, 2024
Julia

COBREXA / COBREXA.jl

COnstraint Based Reconstruction and EXascale Analysis (in Julia)

hpc julia high-performance-computing cobra metabolic-models sbml constraint-based-modeling metabolic-engineering sbml-simulation

Updated Nov 27, 2024
Julia

paulflang / SbmlInterface.jl

Interface between the Systems Biology Markup Language and Julia

julia systems-biology ode modelling differential-equations ordinary-differential-equations sbml sbml-model

Updated Sep 1, 2021
Julia

hetalang / sbml-heta-cases

Testing conversion of SBML => Heta => SimSolver and simulation

julia sbml heta

Updated Sep 25, 2024
Julia

COBREXA / SBMLFBCModels.jl

AbstractFBCModel interface for SBML.jl

sbml sbml-models

Updated Aug 25, 2024
Julia

Released March 2001

Followers: 11 followers
Organization: sbmlteam
Website: sbml.org
Wikipedia: Wikipedia

Related Topics

computational-biology systems-biology xml