Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.
(Semester 4) Intelligence of Biological Systems - End Semester Project
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
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