short-reads

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ClairS - a deep-learning method for long-read somatic small variant calling

bioinformatics deep-learning nanopore genomics somatic-variants haplotypes pacbio somatic-mutations illumina indels phasing snvs long-reads ont long-read-sequencing short-reads

VStrains is a de novo approach for reconstructing strains from viral quasispecies.

Short read mapping and variant calling

Synthetically Engineered Wastewater sequence data for Assessing Genomic Entities

illumina long-reads sequence-analysis short-reads insilico

A flexible complex genome rearrangement simulator for short and long reads

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