NicheNet: predict active ligand-target links between interacting cells
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Updated
Sep 5, 2024 - R
NicheNet: predict active ligand-target links between interacting cells
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
Find causal cell-types underlying complex trait genetics
BANKSY: spatial clustering
R Package for Single-Cell Dataset Processing and Visualization
Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.
It contains the functional code to analyze P2 scRNA-seq and scATAC-seq data.
R Shiny app for Vitessce, an integrative and interactive data visualization tool for exploration of spatial single-cell experiments.
A R Shiny App for single-cell analysis
Repository for projects in Single Cell
Documentation analysis and manuscript figures of QuRIE-seq methods paper.
A Toolbox for Spatial Transcriptomics Analysis
Documentation analysis and manuscript figures
Material for Bioconductor 2023 workshop on interoperation with python
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