All documentation for the workshop is best viewed from the github.io pages. If you click the link below, and nothing happens, you are already looking at the documentation page.
Contact - UC Davis Bioinformatics Core, training.bioinformatics@ucdavis.edu
This one-day online workshop follows a 10x Genomics Visium spatial transcriptomics experiment from sequencing data to visualization. The primary packages used for analysis will be 10x software for sequence reads to counts, and the R package Seurat for downstream analysis. Course materials assume familiarity with single cell RNA-Seq experiments, the command line, and R.
Participants will need access to a computer with a reliable connection to the internet, a current versions of R version and Rstudio installed, and an application that allows them to ssh into a server.
This workshop has already passed. Registrants will have access to a recording of a documentation walk-through on Zoom for 100 days.