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Update directory structure of NCO mode #743

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merged 6 commits into from
Apr 25, 2022
Merged

Update directory structure of NCO mode #743

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d5c84c8
update vertical structure of NCO mode
chan-hoo Apr 19, 2022
a2671cf
Add missing update
chan-hoo Apr 19, 2022
f6c4980
update sample script for nco
chan-hoo Apr 19, 2022
6b8c677
fix typo
chan-hoo Apr 19, 2022
8809a71
Fix typo on write component of new RRFS CONUS
chan-hoo Apr 20, 2022
15729f8
update comment for model_ver
chan-hoo Apr 20, 2022
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32 changes: 12 additions & 20 deletions tests/WE2E/run_WE2E_tests.sh
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Expand Up @@ -854,7 +854,7 @@ SFC_CLIMO_DIR=\"${SFC_CLIMO_DIR}\""
# 2) The directory in which the output files from the post-processor (UPP)
# for a given cycle are stored. The path to this directory is
#
# \$PTMP/com/\$NET/\$envir/\$RUN.\$yyyymmdd/\$hh
# \$PTMP/com/\$NET/\$model_ver/\$RUN.\$yyyymmdd/\$hh
#
# Here, we make the first directory listed above unique to a WE2E test
# by setting RUN to the name of the current test. This will also make
Expand All @@ -872,40 +872,32 @@ SFC_CLIMO_DIR=\"${SFC_CLIMO_DIR}\""
# envir to the same value as RUN (which is just EXPT_SUBDIR). Then, for
# this test, the UPP output will be located in the directory
#
# \$PTMP/com/\$NET/\$RUN/\$RUN.\$yyyymmdd/\$hh
# \$PTMP/com/\$NET/\we2e/\$RUN.\$yyyymmdd/\$hh
#
RUN=\"\${EXPT_SUBDIR}\"
envir=\"\${EXPT_SUBDIR}\""
model_ver="we2e""

#
# Set COMINgfs if using the FV3GFS or the GSMGFS as the external model
# for ICs or LBCs.
#
if [ "${EXTRN_MDL_NAME_ICS}" = "FV3GFS" ] || \
[ "${EXTRN_MDL_NAME_ICS}" = "GSMGFS" ] || \
[ "${EXTRN_MDL_NAME_LBCS}" = "FV3GFS" ] || \
[ "${EXTRN_MDL_NAME_LBCS}" = "GSMGFS" ]; then
# Set COMIN.

COMINgfs=${TEST_COMINgfs:-}
COMIN=${TEST_COMIN:-}

if [ ! -d "${COMINgfs:-}" ] ; then
print_err_msg_exit "\
The directory (COMINgfs) that needs to be specified when running the
if [ ! -d "${COMIN:-}" ] ; then
print_err_msg_exit "\
The directory (COMIN) that needs to be specified when running the
workflow in NCO mode (RUN_ENVIR set to \"nco\") AND using the FV3GFS or
the GSMGFS as the external model for ICs and/or LBCs has not been specified
for this machine (MACHINE):
MACHINE= \"${MACHINE}\""
fi
fi

expt_config_str=${expt_config_str}"
expt_config_str=${expt_config_str}"
#
# Directory that needs to be specified when running the workflow in NCO
# mode (RUN_ENVIR set to \"nco\") AND using the FV3GFS or the GSMGFS as
# the external model for ICs and/or LBCs.
# mode (RUN_ENVIR set to \"nco\").
#
COMINgfs=\"${COMINgfs}\""
COMIN=\"${COMIN}\""

fi
#
# Set STMP and PTMP.
#
Expand Down
1 change: 0 additions & 1 deletion ...n_mdls_suites_nco/config.nco_grid_RRFS_CONUS_13km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v16.sh
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Expand Up @@ -17,7 +17,6 @@ EXTRN_MDL_NAME_ICS="FV3GFS"
FV3GFS_FILE_FMT_ICS="grib2"
EXTRN_MDL_NAME_LBCS="FV3GFS"
FV3GFS_FILE_FMT_LBCS="grib2"
USE_USER_STAGED_EXTRN_FILES="TRUE"

DATE_FIRST_CYCL="20190615"
DATE_LAST_CYCL="20190615"
Expand Down
2 changes: 0 additions & 2 deletions ...nfig.nco_grid_RRFS_CONUS_3km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v15_thompson_mynn_lam3km.sh
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Expand Up @@ -20,8 +20,6 @@ FV3GFS_FILE_FMT_ICS="grib2"
EXTRN_MDL_NAME_LBCS="FV3GFS"
FV3GFS_FILE_FMT_LBCS="grib2"

USE_USER_STAGED_EXTRN_FILES="TRUE"

DATE_FIRST_CYCL="20190615"
DATE_LAST_CYCL="20190615"
CYCL_HRS=( "00" )
Expand Down
29 changes: 18 additions & 11 deletions ush/config.nco.sh
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Expand Up @@ -8,27 +8,34 @@ VERBOSE="TRUE"
RUN_ENVIR="nco"
PREEXISTING_DIR_METHOD="rename"

PREDEF_GRID_NAME="CONUS_25km_GFDLgrid"
PREDEF_GRID_NAME="RRFS_CONUS_25km"
QUILTING="TRUE"

CCPP_PHYS_SUITE="FV3_GFS_v15p2"
CCPP_PHYS_SUITE="FV3_GFS_v16"

FCST_LEN_HRS="06"
LBC_SPEC_INTVL_HRS="6"
FCST_LEN_HRS="6"
LBC_SPEC_INTVL_HRS="3"

DATE_FIRST_CYCL="20190901"
DATE_LAST_CYCL="20190901"
CYCL_HRS=( "18" )
DATE_FIRST_CYCL="20220407"
DATE_LAST_CYCL="20220407"
CYCL_HRS=( "00" )

EXTRN_MDL_NAME_ICS="FV3GFS"
EXTRN_MDL_NAME_LBCS="FV3GFS"

FV3GFS_FILE_FMT_ICS="grib2"
FV3GFS_FILE_FMT_LBCS="grib2"

WRITE_DOPOST="TRUE"

#
# The following must be modified for different platforms and users.
#
RUN="an_experiment"
COMINgfs="/scratch1/NCEPDEV/hwrf/noscrub/hafs-input/COMGFS" # Path to directory containing files from the external model (FV3GFS).
NET="rrfs"
model_ver="v1.0"
RUN="rrfs_test"
COMIN="/scratch1/NCEPDEV/rstprod/com/gfs/prod" # Path to directory containing files from the external model.
FIXLAM_NCO_BASEDIR="/scratch2/BMC/det/FV3LAM_pregen" # Path to directory containing the pregenerated grid, orography, and surface climatology "fixed" files to use for the experiment.
STMP="/scratch2/BMC/det/Gerard.Ketefian/UFS_CAM/NCO_dirs/stmp" # Path to directory STMP that mostly contains input files.
PTMP="/scratch2/BMC/det/Gerard.Ketefian/UFS_CAM/NCO_dirs/ptmp" # Path to directory PTMP in which the experiment's output files will be placed.
STMP="/scratch2/NCEPDEV/fv3-cam/Chan-hoo.Jeon/01_OUT_DATA/stmp" # Path to directory STMP that mostly contains input files.
PTMP="/scratch2/NCEPDEV/fv3-cam/Chan-hoo.Jeon/01_OUT_DATA/ptmp" # Path to directory PTMP in which the experiment's output files will be placed.

66 changes: 31 additions & 35 deletions ush/config_defaults.sh
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Expand Up @@ -17,8 +17,8 @@
#
# NCEP Central Operations
# WCOSS Implementation Standards
# April 17, 2019
# Version 10.2.0
# January 19, 2022
# Version 11.0.0
#
# RUN_ENVIR is described in this document as follows:
#
Expand Down Expand Up @@ -232,18 +232,11 @@ EXEC_SUBDIR="bin"
# Set variables that are only used in NCO mode (i.e. when RUN_ENVIR is
# set to "nco"). Definitions:
#
# COMINgfs:
# The beginning portion of the directory containing files generated by
# the external model (FV3GFS) that the initial and lateral boundary
# condition generation tasks need in order to create initial and boundary
# condition files for a given cycle on the native FV3-LAM grid. For a
# cycle that starts on the date specified by the variable yyyymmdd
# (consisting of the 4-digit year followed by the 2-digit month followed
# by the 2-digit day of the month) and hour specified by the variable hh
# (consisting of the 2-digit hour-of-day), the directory in which the
# workflow will look for the external model files is:
#
# $COMINgfs/gfs.$yyyymmdd/$hh/atmos
# COMIN:
# Directory containing files generated by the external model (FV3GFS, NAM,
# HRRR, etc) that the initial and lateral boundary condition generation tasks
# need in order to create initial and boundary condition files for a given
# cycle on the native FV3-LAM grid.
#
# FIXLAM_NCO_BASEDIR:
# The base directory containing pregenerated grid, orography, and surface
Expand All @@ -258,6 +251,24 @@ EXEC_SUBDIR="bin"
# string in this file, but it can be specified in the user-specified
# workflow configuration file (EXPT_CONFIG_FN).
#
# envir, NET, model_ver, RUN:
# Standard environment variables defined in the NCEP Central Operations WCOSS
# Implementation Standards document as follows:
#
# envir:
# Set to "test" during the initial testing phase, "para" when running
# in parallel (on a schedule), and "prod" in production.
#
# NET:
# Model name (first level of com directory structure)
#
# model_ver:
# Version number of package (second level of com directory structure)
#
# RUN:
# Name of model run (third level of com directory structure).
# In general, same as $NET
#
# STMP:
# The beginning portion of the directory that will contain cycle-dependent
# model input files, symlinks to cycle-independent input files, and raw
Expand All @@ -269,39 +280,24 @@ EXEC_SUBDIR="bin"
#
# $STMP/tmpnwprd/$RUN/$cdate
#
# NET, envir, RUN:
# Variables used in forming the path to the directory that will contain
# the output files from the post-processor (UPP) for a given cycle (see
# definition of PTMP below). These are defined in the WCOSS Implementation
# Standards document as follows:
#
# NET:
# Model name (first level of com directory structure)
#
# envir:
# Set to "test" during the initial testing phase, "para" when running
# in parallel (on a schedule), and "prod" in production.
#
# RUN:
# Name of model run (third level of com directory structure).
#
# PTMP:
# The beginning portion of the directory that will contain the output
# files from the post-processor (UPP) for a given cycle. For a cycle
# that starts on the date specified by yyyymmdd and hour specified by hh
# (where yyyymmdd and hh are as described above), the directory in which
# the UPP output files will be placed will be:
#
# $PTMP/com/$NET/$envir/$RUN.$yyyymmdd/$hh
# $PTMP/com/$NET/$model_ver/$RUN.$yyyymmdd/$hh
#
#-----------------------------------------------------------------------
#
COMINgfs="/base/path/of/directory/containing/gfs/input/files"
COMIN="/path/of/directory/containing/data/files/for/IC/LBCS"
FIXLAM_NCO_BASEDIR=""
STMP="/base/path/of/directory/containing/model/input/and/raw/output/files"
NET="rrfs"
envir="para"
RUN="experiment_name"
NET="rrfs"
model_ver="v1.0"
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@chan-hoo Will you provide some guidance on how this versioning is determined?

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@christinaholtNOAA, there is no specific guideline about this in the nco standards. @JacobCarley-NOAA, @BenjaminBlake-NOAA , do you have an answer to this?

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@christinaholtNOAA I believe it's related to the number of operational implementations that have occurred. Since RRFS is not operational yet, model_ver = "v1.0". For the HRRR, we are on version 4, and with each successive WCOSS1 update we went from hrrr.v4.0.0 to hrrr.v4.0.14. But on WCOSS2, NCO is using hrrr.v4.1, so model_ver = "v4.1". I'm not sure why they are now using 2 digits when they had been using 3 digits for the version numbers though.

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@BenjaminBlake-NOAA, Thank you for the explanation. You're correct. The exact wording in the nco standard is "version number of package in three digits". I'll update the comment and default value to "v.1.0.0".

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@chan-hoo @BenjaminBlake-NOAA Thanks for the replies. That honestly doesn't clear things up too much for me. I'm understand that a frozen version in operations is going to correspond to a given number, but that number is only really applicable to the develop branch for a brief moment in time (if that is even true). Do we have v1.0 until this goes into ops, then we bump it to be working on v2.0 since it would be newer than what is running in operations?

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@christinaholtNOAA From my point of view I think the idea of using v1.0 until it goes into operations makes sense, and then we would increase the version to v2.0 after that. But maybe that doesn't make as much sense for ongoing development. Would it make more sense to increase the version number incrementally with time? For example, v1.0 becomes v1.1, then v1.2, etc. until RRFS is implemented and then we move up to v2.0.

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@BenjaminBlake-NOAA Would NCO accept that we were putting v1.17 (for example) in operations as the first implementation?

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@christinaholtNOAA I don't think they would accept that, so the final code we deliver to NCO will need to use v1.0, but I don't see an issue with using different version numbers during the development process.

RUN="rrfs"
STMP="/base/path/of/directory/containing/model/input/and/raw/output/files"
PTMP="/base/path/of/directory/containing/postprocessed/output/files"
#
#-----------------------------------------------------------------------
Expand Down
2 changes: 1 addition & 1 deletion ush/machine/cheyenne.sh
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Expand Up @@ -69,5 +69,5 @@ MET_BIN_EXEC=${MET_BIN_EXEC:-"bin"}

# Test Data Locations
TEST_PREGEN_BASEDIR="/glade/p/ral/jntp/UFS_SRW_app/FV3LAM_pregen"
TEST_COMINgfs="/glade/p/ral/jntp/UFS_SRW_app/COMGFS"
TEST_COMIN="/glade/p/ral/jntp/UFS_SRW_app/COMGFS"
TEST_EXTRN_MDL_SOURCE_BASEDIR="/glade/p/ral/jntp/UFS_SRW_app/staged_extrn_mdl_files"
2 changes: 1 addition & 1 deletion ush/machine/hera.sh
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Expand Up @@ -72,7 +72,7 @@ MET_BIN_EXEC=${MET_BIN_EXEC:-"bin"}

# Test Data Locations
TEST_PREGEN_BASEDIR="/scratch2/BMC/det/UFS_SRW_app/FV3LAM_pregen"
TEST_COMINgfs="/scratch2/NCEPDEV/fv3-cam/noscrub/UFS_SRW_App/COMGFS"
TEST_COMIN="/scratch2/NCEPDEV/fv3-cam/noscrub/UFS_SRW_App/COMGFS"
TEST_EXTRN_MDL_SOURCE_BASEDIR="/scratch2/BMC/det/UFS_SRW_app/develop/model_data"
TEST_ALT_EXTRN_MDL_SYSBASEDIR_ICS="/scratch2/BMC/det/UFS_SRW_app/dummy_FV3GFS_sys_dir"
TEST_ALT_EXTRN_MDL_SYSBASEDIR_LBCS="/scratch2/BMC/det/UFS_SRW_app/dummy_FV3GFS_sys_dir"
2 changes: 1 addition & 1 deletion ush/machine/jet.sh
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Expand Up @@ -80,5 +80,5 @@ RUN_CMD_POST="srun"

# Test Data Locations
TEST_PREGEN_BASEDIR="/mnt/lfs4/BMC/wrfruc/UFS_SRW_app/FV3LAM_pregen"
TEST_COMINgfs="/mnt/lfs4/BMC/wrfruc/UFS_SRW_app/COMGFS"
TEST_COMIN="/mnt/lfs4/BMC/wrfruc/UFS_SRW_app/COMGFS"
TEST_EXTRN_MDL_SOURCE_BASEDIR="/mnt/lfs4/BMC/wrfruc/UFS_SRW_app/staged_extrn_mdl_files"
2 changes: 1 addition & 1 deletion ush/machine/orion.sh
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Expand Up @@ -66,6 +66,6 @@ MET_BIN_EXEC=${MET_BIN_EXEC:-"bin"}

# Test Data Locations
TEST_PREGEN_BASEDIR="/work/noaa/fv3-cam/UFS_SRW_App/FV3LAM_pregen"
TEST_COMINgfs="/work/noaa/fv3-cam/UFS_SRW_App/COMGFS"
TEST_COMIN="/work/noaa/fv3-cam/UFS_SRW_App/COMGFS"
TEST_EXTRN_MDL_SOURCE_BASEDIR="/work/noaa/fv3-cam/UFS_SRW_App/develop/model_data"

2 changes: 1 addition & 1 deletion ush/machine/wcoss_dell_p3.sh
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Expand Up @@ -78,5 +78,5 @@ MET_BIN_EXEC=${MET_BIN_EXEC:-"exec"}

# Test Data Locations
TEST_PREGEN_BASEDIR="/gpfs/dell2/emc/modeling/noscrub/UFS_SRW_App/FV3LAM_pregen"
TEST_COMINgfs="/gpfs/dell2/emc/modeling/noscrub/UFS_SRW_App/COMGFS"
TEST_COMIN="/gpfs/dell2/emc/modeling/noscrub/UFS_SRW_App/COMGFS"
TEST_EXTRN_MDL_SOURCE_BASEDIR="/gpfs/dell2/emc/modeling/noscrub/UFS_SRW_App/develop/model_data"
6 changes: 3 additions & 3 deletions ush/set_extrn_mdl_params.sh
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Expand Up @@ -9,13 +9,13 @@ function set_extrn_mdl_params() {
#
#-----------------------------------------------------------------------
#
# Use known locations or COMINgfs as default, depending on RUN_ENVIR
# Use known locations or COMIN as default, depending on RUN_ENVIR
#
#-----------------------------------------------------------------------
#
if [ "${RUN_ENVIR}" = "nco" ]; then
EXTRN_MDL_SYSBASEDIR_ICS="${EXTRN_MDL_SYSBASEDIR_ICS:-$COMINgfs}"
EXTRN_MDL_SYSBASEDIR_LBCS="${EXTRN_MDL_SYSBASEDIR_LBCS:-$COMINgfs}"
EXTRN_MDL_SYSBASEDIR_ICS="${EXTRN_MDL_SYSBASEDIR_ICS:-$COMIN}"
EXTRN_MDL_SYSBASEDIR_LBCS="${EXTRN_MDL_SYSBASEDIR_LBCS:-$COMIN}"
else
EXTRN_MDL_SYSBASEDIR_ICS="${EXTRN_MDL_SYSBASEDIR_ICS:-$(set_known_sys_dir \
${EXTRN_MDL_NAME_ICS})}"
Expand Down
6 changes: 3 additions & 3 deletions ush/set_predef_grid_params.sh
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Expand Up @@ -132,7 +132,7 @@ case ${PREDEF_GRID_NAME} in
WRTCMP_stdlat2="${ESGgrid_LAT_CTR}"
WRTCMP_nx="217"
WRTCMP_ny="128"
WRTCMP_lon_lwr_left="-122.719258"
WRTCMP_lon_lwr_left="-122.719528"
WRTCMP_lat_lwr_left="21.138123"
WRTCMP_dx="${ESGgrid_DELX}"
WRTCMP_dy="${ESGgrid_DELY}"
Expand Down Expand Up @@ -224,7 +224,7 @@ case ${PREDEF_GRID_NAME} in
WRTCMP_stdlat2="${ESGgrid_LAT_CTR}"
WRTCMP_nx="416"
WRTCMP_ny="245"
WRTCMP_lon_lwr_left="-122.719258"
WRTCMP_lon_lwr_left="-122.719528"
WRTCMP_lat_lwr_left="21.138123"
WRTCMP_dx="${ESGgrid_DELX}"
WRTCMP_dy="${ESGgrid_DELY}"
Expand Down Expand Up @@ -316,7 +316,7 @@ case ${PREDEF_GRID_NAME} in
WRTCMP_stdlat2="${ESGgrid_LAT_CTR}"
WRTCMP_nx="1799"
WRTCMP_ny="1059"
WRTCMP_lon_lwr_left="-122.719258"
WRTCMP_lon_lwr_left="-122.719528"
WRTCMP_lat_lwr_left="21.138123"
WRTCMP_dx="${ESGgrid_DELX}"
WRTCMP_dy="${ESGgrid_DELY}"
Expand Down
14 changes: 5 additions & 9 deletions ush/setup.sh
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Expand Up @@ -1141,7 +1141,7 @@ check_for_preexist_dir_file "$EXPTDIR" "${PREEXISTING_DIR_METHOD}"
# is not placed directly under COMROOT but several directories further
# down. More specifically, for a cycle starting at yyyymmddhh, it is at
#
# $COMROOT/$NET/$envir/$RUN.$yyyymmdd/$hh
# $COMROOT/$NET/$model_ver/$RUN.$yyyymmdd/$hh
#
# Below, we set COMROOT in terms of PTMP as COMROOT="$PTMP/com". COMOROOT
# is not used by the workflow in community mode.
Expand All @@ -1151,7 +1151,7 @@ check_for_preexist_dir_file "$EXPTDIR" "${PREEXISTING_DIR_METHOD}"
# from the RUN_POST_TN task will be placed, i.e. it is the cycle-independent
# portion of the RUN_POST_TN task's output directory. It is given by
#
# $COMROOT/$NET/$envir
# $COMROOT/$NET/$model_ver
#
# COMOUT_BASEDIR is not used by the workflow in community mode.
#
Expand All @@ -1164,19 +1164,15 @@ FIXclim="${EXPTDIR}/fix_clim"
FIXLAM="${EXPTDIR}/fix_lam"

if [ "${RUN_ENVIR}" = "nco" ]; then

CYCLE_BASEDIR="$STMP/tmpnwprd/$RUN"
CYCLE_BASEDIR="${STMP}/tmpnwprd/${RUN}"
check_for_preexist_dir_file "${CYCLE_BASEDIR}" "${PREEXISTING_DIR_METHOD}"
COMROOT="$PTMP/com"
COMOUT_BASEDIR="$COMROOT/$NET/$envir"
COMROOT="${PTMP}/com"
COMOUT_BASEDIR="${COMROOT}/${NET}/${model_ver}"
check_for_preexist_dir_file "${COMOUT_BASEDIR}" "${PREEXISTING_DIR_METHOD}"

else

CYCLE_BASEDIR="$EXPTDIR"
COMROOT=""
COMOUT_BASEDIR=""

fi
#
#-----------------------------------------------------------------------
Expand Down