Develop branch: Point exregional_make_ics.sh script to the new locati…

…on for geogrid files (fix_am directory) (#366)

* Point exregional_make_ics.sh script to the new location for geogrid files (fix_am directory).
Set the config.community.sh external model staging user-defined variable to "false."

* Change path for geogrid files on Hera.

* Remove if statements for geogrid files in exregional_make_ics.sh, and update paths to fix_am/fix_sfc_climo in setup.sh to be consistent across platforms and remove paths to personal directories.

* Remove GRID_GEN_METHOD and reset EXPT_SUBDIR value. Keep USE_USER_STAGED_EXTRN_FILES set to "TRUE" but comment it out and add additional information for the user to uncomment this line if they wish to use this feature.

* Reset numerous variables to correct values

scripts/exregional_make_ics.sh

@@ -421,13 +421,9 @@ case "${EXTRN_MDL_NAME_ICS}" in
     nsoill_out="9"
   fi
 #
-# These geogrid files need to be moved to more permanent locations.
+# Path to the HRRRX geogrid file.
 #
-  if [ "${MACHINE}" = "HERA" ]; then
-    geogrid_file_input_grid="/scratch2/BMC/det/beck/FV3-LAM/geo_em.d01.nc_HRRRX"
-  elif [ "${MACHINE}" = "JET" ]; then
-    geogrid_file_input_grid="/misc/whome/rtrr/HRRR/static/WPS/geo_em.d01.nc"
-  fi
+  geogrid_file_input_grid="${FIXgsm}/geo_em.d01.nc_HRRRX"
 
   #Note that vgfrc, shdmin/shdmax (minmax_vgfrc), and lai fields are only available in HRRRX 
   #files after mid-July 2019, and only so long as the record order didn't change afterward
@@ -463,15 +459,9 @@ case "${EXTRN_MDL_NAME_ICS}" in
     nsoill_out="9"
   fi
 #
-# These geogrid files need to be moved to more permanent locations.
+# Path to the RAPX geogrid file.
 #
-  if [ "${MACHINE}" = "HERA" ]; then
-    geogrid_file_input_grid="/scratch2/BMC/det/beck/FV3-LAM/geo_em.d01.nc_RAPX"
-  elif [ "${MACHINE}" = "JET" ]; then
-    geogrid_file_input_grid="/misc/whome/rtrr/HRRR/static/WPS/geo_em.d01.nc"
-  elif [ "${MACHINE}" = "CHEYENNE" ]; then
-    geogrid_file_input_grid="/glade/p/ral/jntp/UFS_CAM/fix/geo_em.d01.nc_RAPX"
-  fi
+  geogrid_file_input_grid="${FIXgsm}/geo_em.d01.nc_RAPX"
 
   vgtyp_from_climo=True
   sotyp_from_climo=False

ush/config.community.sh

@@ -26,9 +26,16 @@ FV3GFS_FILE_FMT_LBCS="grib2"
 
 WTIME_RUN_FCST="01:00:00"
 
+#
+# Uncomment the following line in order to use user-staged external model 
+# files with locations and names as specified by EXTRN_MDL_SOURCE_BASEDIR_ICS/
+# LBCS and EXTRN_MDL_FILES_ICS/LBCS.
+#
+#USE_USER_STAGED_EXTRN_FILES="TRUE"
+#
 # The following is specifically for Hera.  It will have to be modified
 # if on another platform, using other dates, other external models, etc.
-USE_USER_STAGED_EXTRN_FILES="TRUE"
+#
 EXTRN_MDL_SOURCE_BASEDIR_ICS="/scratch2/BMC/det/UFS_SRW_app/v1p0/model_data/FV3GFS"
 EXTRN_MDL_FILES_ICS=( "gfs.pgrb2.0p25.f000" )
 EXTRN_MDL_SOURCE_BASEDIR_LBCS="/scratch2/BMC/det/UFS_SRW_app/v1p0/model_data/FV3GFS"

ush/setup.sh

@@ -680,19 +680,19 @@ case $MACHINE in
   "HERA")
     FIXgsm=${FIXgsm:-"/scratch1/NCEPDEV/global/glopara/fix/fix_am"}
     TOPO_DIR=${TOPO_DIR:-"/scratch1/NCEPDEV/global/glopara/fix/fix_orog"}
-    SFC_CLIMO_INPUT_DIR=${SFC_CLIMO_INPUT_DIR:-"/scratch1/NCEPDEV/da/George.Gayno/ufs_utils.git/climo_fields_netcdf"}
+    SFC_CLIMO_INPUT_DIR=${SFC_CLIMO_INPUT_DIR:-"/scratch1/NCEPDEV/global/glopara/fix/fix_sfc_climo"}
     ;;
 
   "ORION")
-    FIXgsm=${FIXgsm:-"/work/noaa/fv3-cam/emc.campara/fix_fv3cam/fix_am"}
-    TOPO_DIR=${TOPO_DIR:-"/work/noaa/fv3-cam/emc.campara/fix_fv3cam/fix_orog"}
-    SFC_CLIMO_INPUT_DIR=${SFC_CLIMO_INPUT_DIR:-"/work/noaa/gsd-fv3-dev/gsketefia/UFS/climo_fields_netcdf"}
+    FIXgsm=${FIXgsm:-"/work/noaa/global/glopara/fix/fix_am"}
+    TOPO_DIR=${TOPO_DIR:-"/work/noaa/global/glopara/fix/fix_orog"}
+    SFC_CLIMO_INPUT_DIR=${SFC_CLIMO_INPUT_DIR:-"/work/noaa/global/glopara/fix/fix_sfc_climo"}
     ;;
 
   "JET")
     FIXgsm=${FIXgsm:-"/lfs4/HFIP/hfv3gfs/glopara/git/fv3gfs/fix/fix_am"}
     TOPO_DIR=${TOPO_DIR:-"/lfs4/HFIP/hfv3gfs/glopara/git/fv3gfs/fix/fix_orog"}
-    SFC_CLIMO_INPUT_DIR=${SFC_CLIMO_INPUT_DIR:-"/lfs1/HFIP/hwrf-data/git/fv3gfs/fix/fix_sfc_climo"}
+    SFC_CLIMO_INPUT_DIR=${SFC_CLIMO_INPUT_DIR:-"/lfs4/HFIP/hfv3gfs/glopara/git/fv3gfs/fix/fix_sfc_climo"}
     ;;
 
   "ODIN")