Add CDEPS to UFS-weather-model for Data component needs

.gitmodules

@@ -38,3 +38,7 @@
   path = DATM
   url = https://github.com/NOAA-EMC/NEMSdatm
   branch = develop
+[submodule "CDEPS"]
+  path = CDEPS-interface/CDEPS
+  url = https://github.com/NOAA-EMC/CDEPS
+  branch = emc/develop

CDEPS-interface/CMakeLists.txt

@@ -0,0 +1,137 @@
+# CDEPS compiler flags
+if(CMAKE_Fortran_COMPILER_ID MATCHES "GNU")
+  set(CMAKE_Fortran_FLAGS "-g -fbacktrace -ffree-line-length-none")
+  set(CMAKE_Fortran_FLAGS_RELEASE "-O2")
+  set(CMAKE_Fortran_FLAGS_DEBUG "-O0 -fcheck=bounds -ffpe-trap=invalid,zero,overflow,underflow" )
+elseif(CMAKE_Fortran_COMPILER_ID MATCHES "Intel")
+  set(CMAKE_Fortran_FLAGS "-g -traceback")
+  set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -O -assume realloc_lhs")
+  set(CMAKE_Fortran_FLAGS_RELEASE "-O2 -fp-model precise")
+  set(CMAKE_Fortran_FLAGS_DEBUG "-O0 -check -check noarg_temp_created -check nopointer -fpe0 -ftrapuv")
+else()
+  message(WARNING "Fortran compiler with ID ${CMAKE_Fortran_COMPILER_ID} will be used with CMake default options")
+endif()
+
+# Too many files to list, so include them via this file
+include("cdeps_files.cmake")
+
+# CDEPS/share
+add_library(share STATIC ${cdeps_share_files} ${ufs_cdeps_share_files})
+add_library(cdeps::share ALIAS share)
+set_target_properties(share PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
+target_include_directories(share PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ufs/cdeps_share)
+target_include_directories(share PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
+                                        $<INSTALL_INTERFACE:mod>)
+target_link_libraries(share PUBLIC esmf)
+list(APPEND LIB_TARGETS share)
+
+# CDEPS/streams
+add_library(streams STATIC ${cdeps_streams_files})
+add_library(cdeps::streams ALIAS streams)
+add_dependencies(streams cdeps::share)
+set_target_properties(streams PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
+target_include_directories(streams PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
+                                          $<INSTALL_INTERFACE:mod>)
+target_compile_definitions(streams PUBLIC "DISABLE_FoX")
+target_link_libraries(streams PUBLIC cdeps::share)
+target_link_libraries(streams PUBLIC esmf PIO::PIO_Fortran)
+list(APPEND LIB_TARGETS streams)
+
+# CDEPS/dshr
+add_library(dshr STATIC ${cdeps_dshr_files})
+add_library(cdeps::dshr ALIAS dshr)
+add_dependencies(dshr cdeps::share cdeps::streams)
+set_target_properties(dshr PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
+target_include_directories(dshr PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
+                                       $<INSTALL_INTERFACE:mod>)
+target_link_libraries(dshr PUBLIC cdeps::share cdeps::streams)
+target_link_libraries(dshr PUBLIC esmf PIO::PIO_Fortran)
+list(APPEND LIB_TARGETS dshr)
+
+# CDEPS/datm
+add_library(datm STATIC ${cdeps_datm_files})
+add_library(cdeps::datm ALIAS datm)
+add_dependencies(datm cdeps::share cdeps::streams cdeps::dshr)
+set_target_properties(datm PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
+target_include_directories(datm PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
+                                       $<INSTALL_INTERFACE:mod>)
+target_link_libraries(datm PUBLIC cdeps::dshr cdeps::share cdeps::streams)
+target_link_libraries(datm PUBLIC esmf PIO::PIO_Fortran)
+list(APPEND LIB_TARGETS datm)
+
+# CDEPS/dice
+add_library(dice STATIC ${cdeps_dice_files})
+add_library(cdeps::dice ALIAS dice)
+add_dependencies(dice cdeps::share cdeps::streams cdeps::dshr)
+set_target_properties(dice PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
+target_include_directories(dice PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
+                                       $<INSTALL_INTERFACE:mod>)
+target_link_libraries(dice PUBLIC cdeps::dshr cdeps::share cdeps::streams)
+target_link_libraries(dice PUBLIC esmf)
+list(APPEND LIB_TARGETS dice)
+
+# CDEPS/dlnd
+add_library(dlnd STATIC ${cdeps_dlnd_files})
+add_library(cdeps::dlnd ALIAS dlnd)
+add_dependencies(dlnd cdeps::share cdeps::streams cdeps::dshr)
+set_target_properties(dlnd PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
+target_include_directories(dlnd PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
+                                       $<INSTALL_INTERFACE:mod>)
+target_link_libraries(dlnd PUBLIC cdeps::dshr cdeps::share cdeps::streams)
+target_link_libraries(dlnd PUBLIC esmf)
+list(APPEND LIB_TARGETS dlnd)
+
+# CDEPS/docn
+add_library(docn STATIC ${cdeps_docn_files})
+add_library(cdeps::docn ALIAS docn)
+add_dependencies(docn cdeps::share cdeps::streams cdeps::dshr)
+set_target_properties(docn PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
+target_include_directories(docn PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
+                                       $<INSTALL_INTERFACE:mod>)
+target_link_libraries(docn PUBLIC cdeps::dshr cdeps::share cdeps::streams)
+target_link_libraries(docn PUBLIC esmf)
+list(APPEND LIB_TARGETS docn)
+
+# CDEPS/drof
+add_library(drof STATIC ${cdeps_drof_files})
+add_library(cdeps::drof ALIAS drof)
+add_dependencies(drof cdeps::share cdeps::streams cdeps::dshr)
+set_target_properties(drof PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
+target_include_directories(drof PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
+                                       $<INSTALL_INTERFACE:mod>)
+target_link_libraries(drof PUBLIC cdeps::dshr cdeps::share cdeps::streams)
+target_link_libraries(drof PUBLIC esmf)
+list(APPEND LIB_TARGETS drof)
+
+# CDEPS/dwav
+add_library(dwav STATIC ${cdeps_dwav_files})
+add_library(cdeps::dwav ALIAS dwav)
+add_dependencies(dwav cdeps::share cdeps::streams cdeps::dshr)
+set_target_properties(dwav PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
+target_include_directories(dwav PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
+                                       $<INSTALL_INTERFACE:mod>)
+target_link_libraries(dwav PUBLIC cdeps::dshr cdeps::share cdeps::streams)
+target_link_libraries(dwav PUBLIC esmf)
+list(APPEND LIB_TARGETS dwav)
+
+###############################################################################
+### Install
+###############################################################################
+
+install(
+  TARGETS   ${LIB_TARGETS}
+  EXPORT    CDEPSExports
+  LIBRARY   DESTINATION lib
+  ARCHIVE   DESTINATION lib
+  COMPONENT Library)
+
+export(EXPORT    CDEPSExports
+       NAMESPACE cdeps::
+       FILE      cdeps-targets.cmake)
+
+install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod DESTINATION ${CMAKE_INSTALL_PREFIX}/CDEPS)
+
+install(EXPORT      CDEPSExports
+        NAMESPACE   cdeps::
+        FILE        cdeps-targets.cmake
+        DESTINATION lib/cmake)

CDEPS-interface/cdeps_files.cmake

@@ -0,0 +1,74 @@
+# CDEPS generates these with genf90.pl acting on templates .in in CDEPS/share
+# For the UFS, they are pre-generated and committed to the UFS repository
+list(APPEND ufs_cdeps_share_files
+  ufs/cdeps_share/shr_assert_mod.F90
+  ufs/cdeps_share/shr_frz_mod.F90
+  ufs/cdeps_share/shr_infnan_mod.F90
+)
+
+list(APPEND cdeps_share_files
+  CDEPS/share/glc_elevclass_mod.F90
+  CDEPS/share/shr_abort_mod.F90
+  CDEPS/share/shr_assert.h
+  CDEPS/share/shr_cal_mod.F90
+  CDEPS/share/shr_const_mod.F90
+  CDEPS/share/shr_kind_mod.F90
+  CDEPS/share/shr_log_mod.F90
+  CDEPS/share/shr_mpi_mod.F90
+  CDEPS/share/shr_orb_mod.F90
+  CDEPS/share/shr_precip_mod.F90
+  CDEPS/share/shr_strconvert_mod.F90
+  CDEPS/share/shr_string_mod.F90
+  CDEPS/share/shr_sys_mod.F90
+  CDEPS/share/shr_timer_mod.F90
+)
+
+list(APPEND cdeps_streams_files
+  CDEPS/streams/dshr_methods_mod.F90
+  CDEPS/streams/dshr_strdata_mod.F90
+  CDEPS/streams/dshr_stream_mod.F90
+  CDEPS/streams/dshr_tinterp_mod.F90
+)
+
+list(APPEND cdeps_dshr_files
+  CDEPS/dshr/dshr_dfield_mod.F90
+  CDEPS/dshr/dshr_fldlist_mod.F90
+  CDEPS/dshr/dshr_mod.F90
+)
+
+list(APPEND cdeps_datm_files
+  CDEPS/datm/atm_comp_nuopc.F90
+  CDEPS/datm/datm_datamode_cfsr_mod.F90
+  CDEPS/datm/datm_datamode_clmncep_mod.F90
+  CDEPS/datm/datm_datamode_core2_mod.F90
+  CDEPS/datm/datm_datamode_cplhist_mod.F90
+  CDEPS/datm/datm_datamode_era5_mod.F90
+  CDEPS/datm/datm_datamode_gefs_mod.F90
+  CDEPS/datm/datm_datamode_jra_mod.F90
+)
+
+list(APPEND cdeps_dice_files
+  CDEPS/dice/dice_datamode_ssmi_mod.F90
+  CDEPS/dice/dice_flux_atmice_mod.F90
+  CDEPS/dice/ice_comp_nuopc.F90
+)
+
+list(APPEND cdeps_dlnd_files
+  CDEPS/dlnd/lnd_comp_nuopc.F90
+)
+
+list(APPEND cdeps_docn_files
+  CDEPS/docn/docn_datamode_aquaplanet_mod.F90
+  CDEPS/docn/docn_datamode_copyall_mod.F90
+  CDEPS/docn/docn_datamode_iaf_mod.F90
+  CDEPS/docn/docn_datamode_som_mod.F90
+  CDEPS/docn/ocn_comp_nuopc.F90
+)
+
+list(APPEND cdeps_drof_files
+  CDEPS/drof/rof_comp_nuopc.F90
+)
+
+list(APPEND cdeps_dwav_files
+  CDEPS/dwav/wav_comp_nuopc.F90
+)

CDEPS-interface/ufs/cdeps_share/dtypes.h

@@ -0,0 +1,6 @@
+#define TYPETEXT 100
+#define TYPEREAL 101
+#define TYPEDOUBLE 102
+#define TYPEINT 103
+#define TYPELONG 104
+#define TYPELOGICAL 105