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super_loop.sh
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super_loop.sh
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#!/bin/bash
names=("avgfp") # ("avgfp" "pab1" "gb1")
split=("first") # ("first" "second" "third")
train_sizes=(50 100 250 500 1000 2000 6000)
batch_size=32
architecture=sep_conv_mix
epochs=100
channels=7
simple=1
simple_trans_nt=0
simple_trans_t=1
aug=0
aug_trans_nt=0
aug_trans_t=0
for p_name in "${names[@]}"; do
if [ $p_name == "avgfp" ]; then
weigths="result_files/saved_models/avgfp_fr_50_25_10_2022_203303/"
l_rate=0.001
elif [ $p_name == "pab1" ]; then
weigths="result_files/saved_models/pab1_23_07_2022_105600/"
l_rate=0.001
else
weigths="result_files/saved_models/gb1_22_07_2022_184057/"
l_rate=0.001
fi
algn_file="datasets/alignment_files/"$p_name"_1000_experimental.clustal"
tsv="nononsense/nononsense_"$p_name".tsv"
echo "$p_name"
echo $weigths
echo "$tsv"
for k in "${split[@]}"; do
path="nononsense/"$k"_split_run/"$p_name"_even_splits/split_"
if [ $simple == 1 ]; then
for i in "${train_sizes[@]}"; do
if [ -d "$path$i" ];
then
python3 -Wdefault ./d4_cmd_driver.py -pn "$p_name" -qn "$p_name" -af $algn_file -te $epochs -bs "$batch_size" -a "$architecture" -rs 1 --use_split_file "$path$i" --tsv_filepath "$tsv" -wf -lr "$l_rate"
else
echo "Failed to locate folder $path$i"
fi
done
fi
if [ $simple_trans_nt == 1 ]; then
for i in "${train_sizes[@]}"; do
if [ -d "$path$i" ];
then
python3 -Wdefault ./d4_cmd_driver.py -pn "$p_name" -qn "$p_name" -af $algn_file -te $epochs -bs "$batch_size" -a "$architecture" -rs 1 --use_split_file "$path$i" --tsv_filepath "$tsv" --transfer_conv_weights $weigths -wf -lr "$l_rate"
else
echo "Failed to locate folder $path$i"
fi
done
fi
if [ $simple_trans_t == 1 ]; then
for i in "${train_sizes[@]}"; do
if [ -d "$path$i" ];
then
python3 -Wdefault ./d4_cmd_driver.py -pn "$p_name" -qn "$p_name" -af $algn_file -te $epochs -bs "$batch_size" -a "$architecture" -rs 1 --use_split_file "$path$i" --tsv_filepath "$tsv" --transfer_conv_weights $weigths -tl -wf -lr "$l_rate"
else
echo "Failed to locate folder $path$i"
fi
done
fi
done
for k in "${split[@]}"; do
path="nononsense/"$k"_split_run/"$p_name"_even_splits/split_"
if [ $aug == 1 ]; then
for i in "${train_sizes[@]}"; do
if [ -d "$path$i" ];
then
python3 -Wdefault ./d4_cmd_driver.py -pn "$p_name" -qn "$p_name" -af $algn_file -te $epochs -bs "$batch_size" -a "$architecture" -rs 1 --use_split_file "$path$i" --tsv_filepath "$tsv" -wf -da -lr "$l_rate"
else
echo "Failed to locate folder $path$i"
fi
done
fi
if [ $aug_trans_nt == 1 ]; then
for i in "${train_sizes[@]}"; do
if [ -d "$path$i" ];
then
python3 -Wdefault ./d4_cmd_driver.py -pn "$p_name" -qn "$p_name" -af $algn_file -te $epochs -bs "$batch_size" -a "$architecture" -rs 1 --use_split_file "$path$i" --tsv_filepath "$tsv" --transfer_conv_weights $weigths -wf -da -lr "$l_rate"
else
echo "Failed to locate folder $path$i"
fi
done
fi
if [ $aug_trans_t == 1 ]; then
for i in "${train_sizes[@]}"; do
if [ -d "$path$i" ];
then
python3 -Wdefault ./d4_cmd_driver.py -pn "$p_name" -qn "$p_name" -af $algn_file -te $epochs -bs "$batch_size" -a "$architecture" -rs 1 --use_split_file "$path$i" --tsv_filepath "$tsv" --transfer_conv_weights $weigths -tl -wf -da -lr "$l_rate"
else
echo "Failed to locate folder $path$i"
fi
done
fi
done
done