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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 37 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 10 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 8 2

  4. data-portal-apis data-portal-apis Public

    UMCCR Data Portal API Backend in cloud native serverless

    Python 1

  5. orcabus orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    Python 3

  6. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 7 4

Repositories

Showing 10 of 122 repositories
  • cttso-ica-to-pieriandx Public

    Transfers data from GDS / creates PierianDx case / run and informatics job for each sample.

    umccr/cttso-ica-to-pieriandx’s past year of commit activity
    Python 0 MIT 0 1 2 Updated Jul 15, 2024
  • data-portal-client Public

    UMCCR Data Portal Frontend

    umccr/data-portal-client’s past year of commit activity
    TypeScript 1 1 7 1 Updated Jul 15, 2024
  • data-portal-apis Public

    UMCCR Data Portal API Backend in cloud native serverless

    umccr/data-portal-apis’s past year of commit activity
    Python 1 0 18 2 Updated Jul 15, 2024
  • orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    umccr/orcabus’s past year of commit activity
    Python 3 0 33 3 Updated Jul 15, 2024
  • infrastructure Public

    Infrastructure as Code at UMCCR

    umccr/infrastructure’s past year of commit activity
    Python 10 8 13 7 Updated Jul 15, 2024
  • htsget-rs-cli Public

    Rust htsget client

    umccr/htsget-rs-cli’s past year of commit activity
    Rust 0 0 1 2 Updated Jul 15, 2024
  • crypt4gh-rust Public Forked from EGA-archive/crypt4gh-rust

    Rust implementation for the Crypt4GH encryption format

    umccr/crypt4gh-rust’s past year of commit activity
    Rust 0 Apache-2.0 2 0 1 Updated Jul 15, 2024
  • RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    umccr/RNAsum’s past year of commit activity
    R 7 4 11 0 Updated Jul 15, 2024
  • orca-ui Public
    umccr/orca-ui’s past year of commit activity
    TypeScript 0 MIT 0 3 1 Updated Jul 15, 2024
  • nextflow-stack Public

    AWS stack to run Nextflow pipelines on Batch using shared resources

    umccr/nextflow-stack’s past year of commit activity
    TypeScript 0 0 2 3 Updated Jul 14, 2024