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Handle sash SV file #126

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pdiakumis opened this issue Jan 12, 2024 · 2 comments · Fixed by #171
Closed

Handle sash SV file #126

pdiakumis opened this issue Jan 12, 2024 · 2 comments · Fixed by #171
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enhancement New feature or request rpkg Pertaining to the R pkg dev

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See https://umccr.slack.com/archives/C025TLC7D/p1704937844950239.
Probably good to also have a chat with the curation team about which expression values they're more interested in.
@pdiakumis pdiakumis added enhancement New feature or request rpkg Pertaining to the R pkg dev labels Jan 12, 2024
@pdiakumis pdiakumis self-assigned this Jan 12, 2024
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We need to prioritise this for v1.2.0 @skanwal so that we can move onto oncoanalyser, probably good to have something in place by the end of this month.

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We can focus on grabbing just the gene names from the SV file - see https://umccr.slack.com/archives/C016A5BSKRC/p1726720912422739?thread_ts=1724722921.773309&cid=C016A5BSKRC

@pdiakumis pdiakumis linked a pull request Sep 26, 2024 that will close this issue
Sash SV support and generalise SV input #171
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Sash SV support and generalise SV input umccr/RNAsum
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