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Submission error: ValueError: 'patient_care_' is not a valid SampleType #149

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alexiswl opened this issue Oct 30, 2023 · 0 comments · Fixed by #150 or #152
Closed

Submission error: ValueError: 'patient_care_' is not a valid SampleType #149

alexiswl opened this issue Oct 30, 2023 · 0 comments · Fixed by #150 or #152
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Submission body was:

{
  "subject_id": "SBJ04394",
  "library_id": "L2301285",
  "project_name": "Nominator",
  "external_specimen_id": "Nom04076_26.10.17",
  "mrn": "Nom04076",
  "sample_type": "patient_care_sample",
  "panel_type": "main",
  "is_identified": "deidentified",
  "indication": "NA",
  "disease_id": 285645000,
  "disease_name": "Disseminated malignancy of unknown primary",
  "requesting_physicians_first_name": "Sean",
  "requesting_physicians_last_name": "Grimmond",
  "specimen_type": 122561005,
  "date_accessioned": "2023-10-30T00:02:20+00:00",
  "date_collected": "2023-10-30T00:00:00+00:00",
  "date_received": "2023-10-30T00:00:00+00:00",
  "gender": "unknown",
  "ethnicity": "unknown",
  "race": "unknown",
  "hospital_number": 99,
  "accession_number": "SBJ04394_L2301285_001",
  "first_name": "John",
  "last_name": "Doe",
  "date_of_birth": "1970-01-01T00:00:00+00:00"
}

Cloudwatch error shows

<html>
<body>
<!--StartFragment-->

File "/home/cttso_ica_to_pieriandx_user/.conda/envs/cttso-ica-to-pieriandx/lib/python3.11/site-packages/cttso_ica_to_pieriandx-1.0-py3.11.egg/utils/accession.py", line 452, in <lambda>
--
SampleType(
File "/home/cttso_ica_to_pieriandx_user/.conda/envs/cttso-ica-to-pieriandx/lib/python3.11/enum.py", line 695, in __call__
return cls.__new__(cls, value)
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/cttso_ica_to_pieriandx_user/.conda/envs/cttso-ica-to-pieriandx/lib/python3.11/enum.py", line 1111, in __new__
raise ve_exc
ValueError: 'patient_care_' is not a valid SampleType

<!--EndFragment-->
</body>
</html>

Likely error to do with removing _sample from name
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