Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Explore JBrowse #86

Open
victorskl opened this issue Jan 11, 2022 · 4 comments
Open

Explore JBrowse #86

victorskl opened this issue Jan 11, 2022 · 4 comments
Assignees
@andrewpatto
Labels
triage & trello Triage and migrate into respective Trello project

Comments

@victorskl
Copy link
Member

Context:
@andrewpatto andrewpatto self-assigned this Jan 13, 2022
@andrewpatto
Copy link
Member

The following is not specifically the React component - but has general info about configuring any embedded view

https://jbrowse.org/jb2/docs/tutorials/embed_linear_genome_view/01_introduction/

@andrewpatto
Copy link
Member

andrewpatto commented Jan 14, 2022 •
edited
Loading

Works fine out of the box as a react component - though worth noting that its react version is a more limited single view - and some of the needed UI components (track selectors etc) would have to be added around this view to get proper functionality (which is a good thing, but still is work)

Screen Shot 2022-01-14 at 1 24 45 pm

@andrewpatto
Copy link
Member

andrewpatto commented Jan 14, 2022 •
edited
Loading

There doesn't seem to be any support for authentication with the htsget endpoint - so this is something that would need to be added.
https://github.com/GMOD/bam-js/blob/master/src/htsget.ts

@andrewpatto
Copy link
Member

htsget is only supported for BAMs currently

@victorskl victorskl added the triage & trello Triage and migrate into respective Trello project label May 8, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@andrewpatto andrewpatto

Labels
triage & trello Triage and migrate into respective Trello project
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@andrewpatto @victorskl