Test unigradicon-warp on a labelmap #55
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| name: cpu-tests | |
| on: | |
| pull_request: | |
| push: | |
| branches: main | |
| jobs: | |
| test-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| python-version: [ '3.7', '3.8', '3.9', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| pip install -e . | |
| wget https://www.hgreer.com/assets/slicer_mirror/RegLib_C01_1.nrrd | |
| wget https://www.hgreer.com/assets/slicer_mirror/RegLib_C01_2.nrrd | |
| wget https://www.hgreer.com/assets/RegLib_C01_1_foreground_mask.nii.gz | |
| - name: Test | |
| run: | | |
| unigradicon-register --fixed=RegLib_C01_2.nrrd --fixed_modality=mri --moving=RegLib_C01_1.nrrd --moving_modality=mri \ | |
| --transform_out=trans.hdf5 --warped_moving_out=warped_C01_1.nrrd --io_iterations=None | |
| unigradicon-register --fixed=RegLib_C01_2.nrrd --fixed_modality=mri --moving=RegLib_C01_1.nrrd --moving_modality=mri \ | |
| --transform_out=trans.hdf5 --warped_moving_out=warped_C01_1.nrrd --io_iterations=3 | |
| unigradicon-warp --fixed=RegLib_C01_2.nrrd --moving=RegLib_C01_1.nrrd \ | |
| --transform=trans.hdf5 --warped_moving_out=warped_2_C01_1.nrrd --nearest_neighbor | |
| unigradicon-warp --fixed=RegLib_C01_2.nrrd --moving=RegLib_C01_1_foreground_mask.nii.gz \ | |
| --transform=trans.hdf5 --warped_moving_out=warped_2_C01_1.nrrd --nearest_neighbor | |