Jenkins install build 1596.

usegalaxy-au · Sep 10, 2024 · 0aa04d3 · 0aa04d3
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7739,3 +7739,4 @@ Install	1593	06/09/24 20:09:44	rgrnastar	False	Installed	iuc	4014de1b6daf	4014de
 Install	1593	06/09/24 20:14:36	rnaquast	False	Installed	iuc	f73ab5187eed	f73ab5187eed				Assembly	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1593/install_log.txt
 Install	1593	06/09/24 20:15:25	rna_starsolo	False	Installed	iuc	45795f582ae9	45795f582ae9				Mapping	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1593/install_log.txt
 Install	1593	06/09/24 20:16:09	samtools_view	False	Installed	iuc	2dce91e11ca7	2dce91e11ca7				SAM/BAM	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1593/install_log.txt
+Install	1596	10/09/24 11:06:37	clair3	True	Tests failed	iuc	3843a30053ee	3843a30053ee	Staging Testing	2/4		Nanopore	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1596/install_log.txt
diff --git a/requests/clair3.yml b/requests/clair3.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -3,17 +3,17 @@ tools:
   owner: iuc
   revisions:
   - c2ef298da409
-  - 6e9aea89e388
   - 4efdca267d51
-  - 3f3e247c053d
   - 78c75f134c16
+  - 3f3e247c053d
+  - 6e9aea89e388
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - c45c9dd066e2
   - 3f438bf5475d
+  - c45c9dd066e2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
@@ -40,23 +40,23 @@ tools:
 - name: annotatemyids
   owner: iuc
   revisions:
+  - 4f2967b27e67
+  - 3e1f6f6d557e
+  - b5d8e5475247
+  - 44018dd6b447
   - cd2480f35935
+  - a79ee60b6926
   - 1aae04680c4b
   - 133f36c29579
-  - fe3ca740a485
-  - 3e1f6f6d557e
-  - a79ee60b6926
-  - 4f2967b27e67
-  - b5d8e5475247
   - f29602ae449e
-  - 44018dd6b447
+  - fe3ca740a485
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
   owner: bgruening
   revisions:
-  - e78e25d3b4bd
   - bc88856eddab
+  - e78e25d3b4bd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus_training
@@ -70,26 +70,26 @@ tools:
 - name: augustus
   owner: bgruening
   revisions:
-  - 09855551d713
-  - ca6d970d931c
   - 28433faa6e42
+  - ca6d970d931c
+  - 09855551d713
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
-  - 92eee5f31117
-  - da5f1924bb2e
   - 728dacaf08a9
   - d77802fe76f7
+  - 92eee5f31117
+  - da5f1924bb2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
-  - fe48aa4ccd5e
-  - 7355bbf5e05f
   - 8fd427007e93
+  - 7355bbf5e05f
+  - fe48aa4ccd5e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -101,16 +101,16 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 8bd92f2404dd
   - 1b9a9409831d
+  - 8bd92f2404dd
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: cpat
   owner: bgruening
   revisions:
-  - 1ac12c0cc7a0
-  - 7ccc6234b54e
   - 8e9e228c54c4
+  - 7ccc6234b54e
+  - 1ac12c0cc7a0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
@@ -142,61 +142,61 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 3bbe70fef6df
-  - b6b5cd37f2a2
-  - 9f2455341fac
   - 582fd74dc2a1
   - 14f588312c56
-  - 756376aeb1ae
+  - b6b5cd37f2a2
   - 9c15ca7e764e
+  - 756376aeb1ae
+  - 9f2455341fac
+  - 3bbe70fef6df
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 8e1ace8f77c6
+  - 0ffe5be70caf
+  - 30fb23d4c31c
   - a230ea445788
   - 989f7c061f35
   - 1691af4a0d17
   - 73428a792541
-  - 0ffe5be70caf
-  - 30fb23d4c31c
+  - 8e1ace8f77c6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
   - 0418d28136de
-  - 494f0bb4a993
   - 57c6718cbfcc
-  - 563a19373357
   - e94187d661df
   - 5a5ae61da69c
+  - 494f0bb4a993
+  - 563a19373357
   - 30f08d74024f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - f77d7b685bb3
   - f31125bb85ea
+  - 7abc5f6dd595
+  - 1bc5a03faf2e
   - 2bba2ff070d9
   - 4b96ced19f75
-  - 1bc5a03faf2e
-  - 7abc5f6dd595
   - d6c7106b7b2e
+  - f77d7b685bb3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
-  - fed64e676186
-  - 52af33194019
-  - 54961e026fe4
   - 520e30695ec3
-  - b3cf4684e9c7
+  - 54961e026fe4
+  - 52af33194019
   - d3af38b9c7e1
+  - b3cf4684e9c7
   - d77fdcca400e
+  - fed64e676186
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -208,9 +208,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
+  - 07d7991bf205
   - 2aea122fbd25
   - 79261884facd
-  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -222,10 +222,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
+  - 602de62d995b
   - 8b3e3657034e
   - 43798b4caee0
   - ef2ad746b589
-  - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -256,9 +256,9 @@ tools:
 - name: interproscan
   owner: bgruening
   revisions:
+  - 74810db257cc
   - c55643c3d813
   - 98cafcbd2578
-  - 74810db257cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: jcvi_gff_stats
@@ -276,26 +276,26 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - e906fa778440
   - 326f9c294b09
+  - e906fa778440
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - 3c1a01127868
   - 370c210d9541
+  - 3c1a01127868
   - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
   - 033755194fe9
-  - e95d52d295d7
   - c8ac28e8ac44
   - b815ec682418
   - 624606f7c996
+  - e95d52d295d7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mob_suite
@@ -325,11 +325,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - bf68eb663bc3
-  - a17498c603ec
   - 8a22554cdde2
-  - eaee459f3d69
+  - a17498c603ec
+  - bf68eb663bc3
   - d643e3b03500
+  - eaee459f3d69
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -341,15 +341,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - 3f987772e283
   - ba6d2c32f797
+  - 3f987772e283
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 41bfbaf3c959
   - 8661b2607b7e
+  - 41bfbaf3c959
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snap_training
@@ -361,22 +361,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
+  - 68693743661e
+  - 8f92c2b26e6d
+  - 5c7b70713fb5
+  - cfcf33df7fc0
   - 268d162b9c49
   - 9473cd297a76
-  - 5c7b70713fb5
-  - 5a29ab10dba6
   - 5b80f544c67f
-  - 68693743661e
-  - cfcf33df7fc0
-  - 8f92c2b26e6d
+  - 5a29ab10dba6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
+  - 5fab4f81391d
   - 09d6806c609e
   - 2b3e65a4252f
-  - 5fab4f81391d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -401,16 +401,16 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - 809dfc93d593
+  - e1a9d6fd258d
+  - ac8250086ac3
   - 37213cf56392
   - ba6f87115e13
   - 200c378d85f3
-  - 45083d070fb8
-  - ac8250086ac3
   - d03af1c7002c
+  - 809dfc93d593
   - 4839e590cb26
-  - e1a9d6fd258d
   - 037a11682176
+  - 45083d070fb8
   - 51dd22484644
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu