Jenkins install build 1624.

usegalaxy-au · Sep 19, 2024 · 358f9fb · 358f9fb
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7801,3 +7801,4 @@ Update	210	18/09/24 16:13:12	scanpy_plot	False	Installed	iuc	2dfb2227a16c	2dfb22
 Update	210	18/09/24 16:37:11	scanpy_remove_confounders	False	Installed	iuc	b70219da4a96	b70219da4a96		6/6		Single-cell	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_210/install_log.txt
 Install	1620	19/09/24 08:55:15	artic_minion	True	Installed	iuc	468b90c41cde	468b90c41cde				Variant Calling	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1620/install_log.txt
 Install	1622	19/09/24 09:14:09	data_manager_primer_scheme_bedfiles	True	Installed	iuc	dd451e45681c	dd451e45681c		0/0		None	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1622/install_log.txt
+Install	1624	19/09/24 10:12:40	rseqc	False	Installed	nilesh	27e16a30667a	latest		31/31		RSeQC	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1624/install_log.txt
diff --git a/requests/rseqc.yml b/requests/rseqc.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,18 +2,18 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 78c75f134c16
-  - 3f3e247c053d
   - 4efdca267d51
+  - 3f3e247c053d
+  - 78c75f134c16
   - 6e9aea89e388
   - c2ef298da409
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
   owner: iuc
   revisions:
-  - c45c9dd066e2
   - 3f438bf5475d
+  - c45c9dd066e2
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_gaeval
@@ -33,23 +33,23 @@ tools:
 - name: aegean_parseval
   owner: iuc
   revisions:
-  - 1b52f0c8ad7f
   - d6c074a93c51
+  - 1b52f0c8ad7f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 133f36c29579
   - fe3ca740a485
-  - cd2480f35935
-  - 4f2967b27e67
-  - 3e1f6f6d557e
-  - b5d8e5475247
-  - 1aae04680c4b
   - f29602ae449e
-  - a79ee60b6926
   - 44018dd6b447
+  - a79ee60b6926
+  - b5d8e5475247
+  - 1aae04680c4b
+  - 4f2967b27e67
+  - 133f36c29579
+  - 3e1f6f6d557e
+  - cd2480f35935
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -62,34 +62,34 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
-  - dc027fa56d55
   - 7be22100e5e1
+  - dc027fa56d55
   - 6519ebe25019
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
-  - 28433faa6e42
   - ca6d970d931c
   - 09855551d713
+  - 28433faa6e42
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
-  - da5f1924bb2e
   - d77802fe76f7
   - 728dacaf08a9
+  - da5f1924bb2e
   - 92eee5f31117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
+  - 8fd427007e93
   - fe48aa4ccd5e
   - 7355bbf5e05f
-  - 8fd427007e93
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: braker3
@@ -101,8 +101,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 1b9a9409831d
   - 8bd92f2404dd
+  - 1b9a9409831d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: compleasm
@@ -114,9 +114,9 @@ tools:
 - name: cpat
   owner: bgruening
   revisions:
+  - 8e9e228c54c4
   - 1ac12c0cc7a0
   - 7ccc6234b54e
-  - 8e9e228c54c4
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
@@ -148,60 +148,60 @@ tools:
 - name: funannotate_annotate
   owner: iuc
   revisions:
-  - 3bbe70fef6df
-  - 582fd74dc2a1
   - 9f2455341fac
-  - 9c15ca7e764e
+  - 14f588312c56
+  - 3bbe70fef6df
   - 756376aeb1ae
+  - 9c15ca7e764e
   - b6b5cd37f2a2
-  - 14f588312c56
+  - 582fd74dc2a1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
   - 8e1ace8f77c6
-  - 0ffe5be70caf
-  - 30fb23d4c31c
   - a230ea445788
-  - 73428a792541
   - 1691af4a0d17
   - 989f7c061f35
+  - 0ffe5be70caf
+  - 73428a792541
+  - 30fb23d4c31c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
+  - e94187d661df
   - 563a19373357
-  - 57c6718cbfcc
   - 5a5ae61da69c
-  - 0418d28136de
-  - 30f08d74024f
+  - 57c6718cbfcc
   - 494f0bb4a993
-  - e94187d661df
+  - 30f08d74024f
+  - 0418d28136de
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - f31125bb85ea
-  - 1bc5a03faf2e
   - 7abc5f6dd595
-  - d6c7106b7b2e
+  - f31125bb85ea
   - f77d7b685bb3
-  - 4b96ced19f75
   - 2bba2ff070d9
+  - 1bc5a03faf2e
+  - 4b96ced19f75
+  - d6c7106b7b2e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
+  - b3cf4684e9c7
+  - d77fdcca400e
   - fed64e676186
   - 54961e026fe4
   - 52af33194019
   - 520e30695ec3
-  - b3cf4684e9c7
-  - d77fdcca400e
   - d3af38b9c7e1
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -214,9 +214,9 @@ tools:
 - name: gff_to_prot
   owner: iuc
   revisions:
+  - 07d7991bf205
   - 79261884facd
   - 2aea122fbd25
-  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -228,10 +228,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 43798b4caee0
+  - 602de62d995b
   - ef2ad746b589
   - 8b3e3657034e
-  - 602de62d995b
+  - 43798b4caee0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -255,8 +255,8 @@ tools:
 - name: infernal
   owner: bgruening
   revisions:
-  - 477d829d3250
   - c9e29ac5d099
+  - 477d829d3250
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: interproscan
@@ -282,25 +282,25 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - e906fa778440
   - 326f9c294b09
+  - e906fa778440
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
+  - d46d803ca6cc
   - 3c1a01127868
   - 370c210d9541
-  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - e95d52d295d7
   - 624606f7c996
-  - c8ac28e8ac44
+  - e95d52d295d7
   - b815ec682418
+  - c8ac28e8ac44
   - 033755194fe9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -338,10 +338,10 @@ tools:
   owner: crs4
   revisions:
   - a17498c603ec
+  - bf68eb663bc3
   - 8a22554cdde2
   - eaee459f3d69
   - d643e3b03500
-  - bf68eb663bc3
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -353,15 +353,15 @@ tools:
 - name: repeat_masker
   owner: bgruening
   revisions:
-  - ba6d2c32f797
   - 3f987772e283
+  - ba6d2c32f797
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: repeatmodeler
   owner: csbl
   revisions:
-  - 8661b2607b7e
   - 41bfbaf3c959
+  - 8661b2607b7e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: sanntis_marine
@@ -379,22 +379,22 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
-  - 68693743661e
-  - 5c7b70713fb5
   - 8f92c2b26e6d
-  - 5b80f544c67f
   - 268d162b9c49
+  - cfcf33df7fc0
   - 5a29ab10dba6
+  - 5c7b70713fb5
+  - 68693743661e
+  - 5b80f544c67f
   - 9473cd297a76
-  - cfcf33df7fc0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
-  - 2b3e65a4252f
-  - 09d6806c609e
   - 5fab4f81391d
+  - 09d6806c609e
+  - 2b3e65a4252f
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -406,8 +406,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - 10b84b577117
   - eb35257d2e29
+  - 10b84b577117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -419,17 +419,17 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
+  - 45083d070fb8
+  - ba6f87115e13
+  - ac8250086ac3
   - 4839e590cb26
-  - e1a9d6fd258d
+  - d03af1c7002c
   - 37213cf56392
   - 200c378d85f3
-  - 037a11682176
-  - ba6f87115e13
-  - d03af1c7002c
-  - 809dfc93d593
+  - e1a9d6fd258d
   - 51dd22484644
-  - 45083d070fb8
-  - ac8250086ac3
+  - 809dfc93d593
+  - 037a11682176
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel