Jenkins install build 1689.

usegalaxy-au · Oct 29, 2024 · b9db3ae · b9db3ae
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diff --git a/automated_tool_installation_log.tsv b/automated_tool_installation_log.tsv
@@ -7980,3 +7980,4 @@ Update	215	23/10/24 06:52:39	seqtk	False	Installed	iuc	a019807f4e67	a019807f4e67
 Update	215	23/10/24 07:35:35	snpeff	False	Installed	iuc	ca2b512e8d7c	ca2b512e8d7c		13/13		Annotation	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/update_build_215/install_log.txt
 Install	1685	24/10/24 05:15:33	aarnet_filesender	True	Installed	galaxy-australia	8a4b0f14aa4e	latest		2/2		Send Data	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1685/install_log.txt
 Install	1687	29/10/24 00:49:41	cemitool	True	Installed	iuc	9d93999d9028	9d93999d9028		3/3		RNA-seq	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1687/install_log.txt
+Install	1689	29/10/24 02:51:46	alphafold2	False	Installed	galaxy-australia	e7f1b552a695	latest				Proteomic AI	toolshed.g2.bx.psu.edu	/var/lib/jenkins/galaxy_tool_automation/install_build_1689/install_log.txt
diff --git a/requests/alphafold-upgrade.yml b/requests/alphafold-upgrade.yml
diff --git a/staging.gvl.org.au/annotation.yml b/staging.gvl.org.au/annotation.yml
@@ -2,11 +2,11 @@ tools:
 - name: abricate
   owner: iuc
   revisions:
-  - 3f3e247c053d
-  - 6e9aea89e388
-  - c2ef298da409
   - 4efdca267d51
+  - 6e9aea89e388
+  - 3f3e247c053d
   - 78c75f134c16
+  - c2ef298da409
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_canongff3
@@ -19,8 +19,8 @@ tools:
 - name: aegean_gaeval
   owner: iuc
   revisions:
-  - 8dc7512c9dc9
   - 1dd7adc21b6d
+  - 8dc7512c9dc9
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: aegean_locuspocus
@@ -33,23 +33,23 @@ tools:
 - name: aegean_parseval
   owner: iuc
   revisions:
-  - d6c074a93c51
   - 1b52f0c8ad7f
+  - d6c074a93c51
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: annotatemyids
   owner: iuc
   revisions:
-  - 1aae04680c4b
-  - 133f36c29579
-  - cd2480f35935
   - fe3ca740a485
+  - cd2480f35935
+  - 3e1f6f6d557e
+  - f29602ae449e
   - b5d8e5475247
+  - 133f36c29579
   - 44018dd6b447
-  - a79ee60b6926
   - 4f2967b27e67
-  - 3e1f6f6d557e
-  - f29602ae449e
+  - 1aae04680c4b
+  - a79ee60b6926
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: antismash
@@ -62,35 +62,35 @@ tools:
 - name: augustus_training
   owner: bgruening
   revisions:
-  - dc027fa56d55
   - 6519ebe25019
-  - f1e653756174
+  - dc027fa56d55
   - 7be22100e5e1
+  - f1e653756174
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: augustus
   owner: bgruening
   revisions:
   - 28433faa6e42
-  - bd0e53f3a891
-  - 09855551d713
   - ca6d970d931c
+  - 09855551d713
+  - bd0e53f3a891
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: bakta
   owner: iuc
   revisions:
-  - 92eee5f31117
-  - da5f1924bb2e
   - d77802fe76f7
+  - da5f1924bb2e
   - 728dacaf08a9
+  - 92eee5f31117
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: barrnap
   owner: iuc
   revisions:
-  - fe48aa4ccd5e
   - 7355bbf5e05f
+  - fe48aa4ccd5e
   - 8fd427007e93
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -103,8 +103,8 @@ tools:
 - name: chipseeker
   owner: rnateam
   revisions:
-  - 1b9a9409831d
   - 8bd92f2404dd
+  - 1b9a9409831d
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: compleasm
@@ -116,16 +116,16 @@ tools:
 - name: cpat
   owner: bgruening
   revisions:
-  - 1ac12c0cc7a0
   - 7ccc6234b54e
   - 8e9e228c54c4
+  - 1ac12c0cc7a0
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: eggnog_mapper
   owner: galaxyp
   revisions:
-  - d9c3016f7283
   - 9d1fbff733cf
+  - d9c3016f7283
   - 63662ae295d6
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -151,60 +151,60 @@ tools:
   owner: iuc
   revisions:
   - 9c15ca7e764e
-  - 3bbe70fef6df
   - 582fd74dc2a1
-  - 14f588312c56
   - 756376aeb1ae
   - b6b5cd37f2a2
+  - 3bbe70fef6df
+  - 14f588312c56
   - 9f2455341fac
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_clean
   owner: iuc
   revisions:
-  - 1691af4a0d17
-  - a230ea445788
-  - 0ffe5be70caf
   - 8e1ace8f77c6
-  - 989f7c061f35
-  - 73428a792541
+  - 0ffe5be70caf
+  - a230ea445788
   - 30fb23d4c31c
+  - 73428a792541
+  - 989f7c061f35
+  - 1691af4a0d17
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_compare
   owner: iuc
   revisions:
   - 494f0bb4a993
-  - 0418d28136de
   - 563a19373357
+  - 5a5ae61da69c
+  - e94187d661df
   - 30f08d74024f
+  - 0418d28136de
   - 57c6718cbfcc
-  - e94187d661df
-  - 5a5ae61da69c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_predict
   owner: iuc
   revisions:
-  - 2bba2ff070d9
   - 7abc5f6dd595
-  - 1bc5a03faf2e
-  - f31125bb85ea
-  - f77d7b685bb3
   - 4b96ced19f75
+  - 2bba2ff070d9
   - d6c7106b7b2e
+  - 1bc5a03faf2e
+  - f77d7b685bb3
+  - f31125bb85ea
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: funannotate_sort
   owner: iuc
   revisions:
+  - 54961e026fe4
   - fed64e676186
-  - d77fdcca400e
-  - 520e30695ec3
+  - d3af38b9c7e1
   - 52af33194019
   - b3cf4684e9c7
-  - 54961e026fe4
-  - d3af38b9c7e1
+  - 520e30695ec3
+  - d77fdcca400e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: get_orfs_or_cdss
@@ -217,8 +217,8 @@ tools:
   owner: iuc
   revisions:
   - 79261884facd
-  - 07d7991bf205
   - 2aea122fbd25
+  - 07d7991bf205
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goenrichment
@@ -230,10 +230,10 @@ tools:
 - name: goseq
   owner: iuc
   revisions:
-  - 602de62d995b
-  - 43798b4caee0
   - ef2ad746b589
   - 8b3e3657034e
+  - 43798b4caee0
+  - 602de62d995b
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: goslimmer
@@ -284,25 +284,25 @@ tools:
 - name: maker_map_ids
   owner: iuc
   revisions:
-  - e906fa778440
   - 326f9c294b09
+  - e906fa778440
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: maker
   owner: iuc
   revisions:
-  - d46d803ca6cc
   - 3c1a01127868
   - 370c210d9541
+  - d46d803ca6cc
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: mitos2
   owner: iuc
   revisions:
-  - c8ac28e8ac44
-  - 033755194fe9
   - 624606f7c996
   - b815ec682418
+  - 033755194fe9
+  - c8ac28e8ac44
   - e95d52d295d7
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
@@ -345,11 +345,11 @@ tools:
 - name: prokka
   owner: crs4
   revisions:
-  - eaee459f3d69
   - 8a22554cdde2
-  - d643e3b03500
   - bf68eb663bc3
+  - d643e3b03500
   - a17498c603ec
+  - eaee459f3d69
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: red
@@ -393,23 +393,23 @@ tools:
 - name: snpeff
   owner: iuc
   revisions:
+  - 5c7b70713fb5
   - 68693743661e
-  - ca2b512e8d7c
+  - 5a29ab10dba6
   - 268d162b9c49
+  - 8f92c2b26e6d
   - 6322be79bd8e
-  - 5a29ab10dba6
   - 5b80f544c67f
   - cfcf33df7fc0
-  - 5c7b70713fb5
-  - 8f92c2b26e6d
+  - ca2b512e8d7c
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snpsift
   owner: iuc
   revisions:
   - 2b3e65a4252f
-  - 09d6806c609e
   - 5fab4f81391d
+  - 09d6806c609e
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: snptools
@@ -421,8 +421,8 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
-  - eb35257d2e29
   - 10b84b577117
+  - eb35257d2e29
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: tbl2gff3
@@ -434,24 +434,24 @@ tools:
 - name: tbprofiler
   owner: iuc
   revisions:
-  - ba6f87115e13
   - 809dfc93d593
-  - d03af1c7002c
   - 4839e590cb26
   - 37213cf56392
-  - 200c378d85f3
-  - 51dd22484644
-  - ac8250086ac3
   - 45083d070fb8
-  - 037a11682176
+  - ba6f87115e13
   - e1a9d6fd258d
+  - d03af1c7002c
+  - 200c378d85f3
+  - 037a11682176
+  - ac8250086ac3
+  - 51dd22484644
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_gumbel
   owner: iuc
   revisions:
-  - 8fc50fe60127
   - f50807720df1
+  - 8fc50fe60127
   tool_panel_section_label: Annotation
   tool_shed_url: toolshed.g2.bx.psu.edu
 - name: transit_hmm