Update test_run_chipsff.py #18

	name: CHIPS-FF github action
	on: [push, pull_request]

	jobs:
	miniconda:
	name: Miniconda ${{ matrix.os }}
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: ["ubuntu-latest"]
	steps:
	- uses: actions/checkout@v3
	- uses: conda-incubator/setup-miniconda@v3
	with:
	activate-environment: test
	environment-file: environment.yml
	python-version: "3.10"
	auto-activate-base: false
	- shell: bash -l {0}
	run: \|
	conda info
	conda list
	- name: Lint
	shell: bash -l {0}
	run: \|
	conda install flake8 pycodestyle pydocstyle
	# flake8 --ignore E203,W503 --exclude=examples,tests,scripts --statistics --count --exit-zero alignn
	# pycodestyle --ignore E203,W503 --exclude=examples,tests,scripts alignn
	# pydocstyle --match-dir=core --match-dir=io --match-dir=io --match-dir=ai --match-dir=analysis --match-dir=db --match-dir=tasks --count alignn

	- name: Run pytest
	shell: bash -l {0}
	run: \|
	#source ~/.bashrc
	find . -type f > before_test_files.txt
	conda env create -f environment.yml
	conda activate chipsff
	#pip install -r requirements.txt
	export CUDA_VISIBLE_DEVICES="-1"
	#pip install -r requirements.txt
	pip install flake8 pytest pycodestyle pydocstyle codecov pytest-cov coverage
	python setup.py develop
	echo 'environment.yml'
	conda env export
	coverage run -m pytest
	coverage report -m -i
	codecov
	# codecov --token="85bd9c5d-9e55-4f6d-bd69-350ee5e3bb41"
	find . -type f > after_test_files.txt

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