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Qiskit upgraded #254

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Sep 17, 2022
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03fa5ab
Image augmentation.
knc6 May 30, 2021
30fd296
Augment images.
knc6 May 31, 2021
7c70aa0
Augment images.
knc6 May 31, 2021
f51b99e
Specie update.
knc6 May 31, 2021
a057253
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 May 31, 2021
e026122
Add Latt2D, STM image (b-1) fix, image augmentation fix.
knc6 Jun 1, 2021
a6fdc87
Add Latt2D, STM image (b-1) fix, image augmentation fix.
knc6 Jun 1, 2021
f386efe
Update conf.py
knc6 Jun 1, 2021
5910e09
Update conf.py
knc6 Jun 1, 2021
4878026
Multi-output graph bacthing.
knc6 Jun 7, 2021
e52fda3
Add EDOS dataset.
knc6 Jun 7, 2021
1372a4a
Temp.
knc6 Jun 8, 2021
1ca37ce
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 Jun 8, 2021
9fa0101
Add circuit maker.
knc6 Jun 12, 2021
2fb8b4d
Add circuit maker.
knc6 Jun 12, 2021
3a47dfd
NELECT update.
knc6 Jun 19, 2021
81d21cf
Version update, more DBs added.
knc6 Jun 19, 2021
430e1fc
Fix CHGCAR vasp.
knc6 Jun 20, 2021
d7a2d14
Added volumetric reshape for CHGCAR.
knc6 Jun 20, 2021
e94fc1c
Tmp
knc6 Jun 20, 2021
dcc5301
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 Jun 20, 2021
f266490
Merge branch 'master' into develop
knc6 Jun 20, 2021
4da1b75
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 Jun 21, 2021
be77798
Tershoff Hamman update, specie update.
knc6 Jun 23, 2021
e08c2f7
Add crop from center in STM.
knc6 Jun 23, 2021
794fb15
Add Fourier transfor in STM.
knc6 Jun 23, 2021
ad5c765
Update STM pytest.
knc6 Jun 23, 2021
a8475d8
Add DPI to STM.
knc6 Jun 23, 2021
cf5a47a
Zeo++ added, Atoms cif update, STM update, random vacancy maker added.
knc6 Jul 1, 2021
5eb67bf
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 Jul 1, 2021
8507a0c
Atoms tempfile fix, Potcar from atoms module added.
knc6 Jul 1, 2021
cf5da8f
Test for docs.
knc6 Jul 1, 2021
b97b86b
C2DB link update, docs Atoms update.
knc6 Jul 1, 2021
a8acf56
C2DB link update, docs Atoms update.
knc6 Jul 1, 2021
cc1e273
Version update, COD DB, QM9 JCTC DB added.
knc6 Jul 6, 2021
436c668
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 Jul 6, 2021
bdd9c76
Merge branch 'master' into develop
knc6 Jul 6, 2021
a62f845
Compostion bug fix, elemental descriptor added.
knc6 Jul 6, 2021
52cd71c
Merge branch 'master' into develop
knc6 Jul 6, 2021
127f9bb
Develop (#186)
tavazza Jul 8, 2021
686a23d
Delete __init__.py
knc6 Jul 8, 2021
97992df
stylecss added.
knc6 Jul 8, 2021
3598b0c
stylecss added.
knc6 Jul 8, 2021
2430cce
Adding extra Makefile/
knc6 Jul 8, 2021
675f161
Remove examples from docs.
knc6 Jul 8, 2021
217c049
Docs update.
knc6 Jul 8, 2021
98ca4c6
Docs update.
knc6 Jul 8, 2021
a776420
Docs update.
knc6 Jul 8, 2021
90b8511
Docs update.
knc6 Jul 8, 2021
880d496
Docs update.
knc6 Jul 8, 2021
cc93938
Docs update.
knc6 Jul 8, 2021
ac3bf7e
Docs update.
knc6 Jul 8, 2021
e706d4a
Docs update.
knc6 Jul 8, 2021
903af3b
Docs update.
knc6 Jul 8, 2021
e2d7216
Docs update.
knc6 Jul 8, 2021
91e00f1
Tutorials update.
knc6 Jul 9, 2021
589d99b
Tutorials docs update.
Jul 11, 2021
ca1d781
Docs update,pdb reader updated.
Jul 12, 2021
28f47fd
Update action_build.yml
knc6 Jul 12, 2021
5c5f698
Update action_build.yml
knc6 Jul 12, 2021
4695a6c
Remove pytraj strong dependencies.
Jul 12, 2021
a0eb5c6
Update docs, Added PDBBind and HPOV datasets.
Jul 12, 2021
7709cdf
Docs update.
Jul 12, 2021
ab105fc
Merge branch 'master' into develop
knc6 Jul 12, 2021
83873dd
Add thcikness to surface builder.
knc6 Jul 17, 2021
dea194a
Surface builder update, Chemical only magpie descriptors added, pdb_c…
knc6 Jul 19, 2021
1883178
Merge branch 'master' into develop
knc6 Jul 19, 2021
753df8c
Typo fix.
knc6 Jul 19, 2021
018d6de
Add names to chem descs.
knc6 Jul 19, 2021
725969c
Lessen hermsolver pytest.
knc6 Jul 19, 2021
78f56dc
Reduced pytest.
knc6 Jul 19, 2021
50b0bad
Reduced pytest.
knc6 Jul 19, 2021
b37ad66
Reduced pytest.
knc6 Jul 19, 2021
4bc6451
Reduced pytest.
knc6 Jul 19, 2021
bd1c657
Reduced pytest.
knc6 Jul 19, 2021
b3c0fd4
No DFT3D
knc6 Jul 19, 2021
f98d74c
Exclude dft_3d dataset for memory issue.
knc6 Jul 19, 2021
75840a3
Update figshare test.
knc6 Jul 19, 2021
0a78d00
Update figshare test.
knc6 Jul 19, 2021
443f8df
Exclude db from coverage.
knc6 Jul 19, 2021
5f9ba7c
Exclude db from coverage.
knc6 Jul 19, 2021
c55018b
Add magpie.json.
knc6 Jul 19, 2021
0b063fd
Merge branch 'master' into develop
knc6 Jul 19, 2021
7523c27
Add magpie.json.
knc6 Jul 19, 2021
ca76cd2
Wien2k bands bug fix.
knc6 Jul 22, 2021
0b72e9f
Wien2k bands bug fix.
knc6 Jul 22, 2021
2bf7159
Update JARVIS-FF,Elastictensor,LAMMPS parse folder, VASP bandstructur…
knc6 Jul 24, 2021
a6d39f2
JFF update.
knc6 Jul 25, 2021
424a7c3
Add JQE_TB3 and hMOF dataset.
knc6 Aug 6, 2021
5c38354
Update LAMMPS module.
knc6 Aug 6, 2021
b2aae72
Update LAMMPS module.
knc6 Aug 6, 2021
6ab3e16
Fix elastic tensor module.
knc6 Aug 6, 2021
b9982e7
Figshare update, docs db name update.
knc6 Aug 7, 2021
e444b00
Merge branch 'master' into develop
knc6 Aug 7, 2021
38a18db
Substitutions.
Aug 10, 2021
6ae2331
Update figshare dft_3d, cfid_3d.
knc6 Aug 18, 2021
26cbd85
Docs data update.
knc6 Aug 18, 2021
780e8ec
Generate substitutions.
knc6 Aug 18, 2021
d0ddb66
Fix merge.
knc6 Aug 18, 2021
0f35770
Lint fix.
knc6 Aug 18, 2021
186eb3d
Merge branch 'master' into develop
knc6 Aug 18, 2021
ae79032
Update DOS.
knc6 Aug 19, 2021
a1dec83
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 Aug 19, 2021
1047f09
Update DOS.
knc6 Aug 19, 2021
7e13862
Adding folders for nexus setup.
knc6 Aug 26, 2021
754f6b5
Update QMOF and hMOF info.
knc6 Oct 4, 2021
37d8b28
Merge branch 'master' into develop
knc6 Oct 4, 2021
35b41c7
Fixing auto klength error.
knc6 Oct 5, 2021
b8e8860
Adding zeopp surface area.
knc6 Oct 5, 2021
8291555
Vacancy bug fix, added hmof to docs.
knc6 Oct 27, 2021
87835eb
vacancy update.
knc6 Oct 27, 2021
6b6268e
QE inputs update.
knc6 Dec 6, 2021
eb1eb23
Pyhon 3.9 test, added QE el-ph, VASP XANES, modified hmof db details.
knc6 Dec 17, 2021
1b6e4fa
Update Contribution.rst
knc6 Dec 17, 2021
a7096af
Minor lint fix.
knc6 Dec 17, 2021
e131c22
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 Dec 17, 2021
67e451c
Update action_build.yml
knc6 Dec 17, 2021
51da0c2
Update action_build.yml
knc6 Dec 17, 2021
5d4d5eb
Fix qiskit requirements.
knc6 Dec 19, 2021
a4e0e03
Fix phonopy requirements.
knc6 Dec 19, 2021
a6e81d6
Fix all requirements.
knc6 Dec 19, 2021
5d2196b
Fix phonopy requirements.
knc6 Dec 19, 2021
8f5644c
QE test.
knc6 Dec 20, 2021
686f26b
QE test.
knc6 Dec 20, 2021
77823cd
Update action_build.
knc6 Dec 20, 2021
54e86ab
Try other python versions.
knc6 Dec 20, 2021
e97ab43
Try other python versions.
knc6 Dec 20, 2021
adf9d2d
README updates.
knc6 Dec 20, 2021
b4ef951
Merge branch 'master' into develop
knc6 Dec 20, 2021
62a4abd
Adding nexus. (#197)
wines1 Dec 20, 2021
37a6a73
Revert back.
knc6 Dec 20, 2021
b19e00c
Update .readthedocs.yaml
knc6 Dec 20, 2021
966fde9
Update dev-requirements.txt
knc6 Dec 20, 2021
d5aa091
Docs requirements update.
knc6 Dec 20, 2021
19d87d1
Update .readthedocs.yaml
knc6 Dec 20, 2021
2aec2f1
Update requirements.txt
knc6 Dec 20, 2021
e42d5d7
Update .readthedocs.yaml
knc6 Dec 20, 2021
c8be140
Update requirements.txt
knc6 Dec 20, 2021
a9b5ba6
Update .readthedocs.yaml
knc6 Dec 20, 2021
b71787a
Update requirements.txt
knc6 Dec 20, 2021
1f3080f
Update requirements.txt
knc6 Dec 20, 2021
383ef4a
Update requirements.txt
knc6 Dec 20, 2021
85daf0e
Update requirements.txt
knc6 Dec 20, 2021
8c7844c
Update requirements.txt
knc6 Dec 20, 2021
163c47f
Update atoms.py
knc6 Dec 20, 2021
0cb61d0
Fixe pbc in ase_to_Atoms.
knc6 Dec 20, 2021
88139a6
Add installation tests (#214)
SauravMaheshkar Dec 28, 2021
891621d
Adding QE super.
knc6 Jan 11, 2022
7d3d96d
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 Jan 11, 2022
14f3dc7
Minor changes to QE module, atoms xyz fix.
knc6 Jan 11, 2022
8b0e3ef
Adding qe_tb info, and version update.
knc6 Jan 12, 2022
f24d948
Merge branch 'master' into develop
knc6 Jan 12, 2022
3b37a00
Update __init__.py
knc6 Jan 12, 2022
2484f85
WIP super QE.
knc6 Jan 25, 2022
6de9c63
Working version of ScSi.
knc6 Jan 26, 2022
87683e2
QE inputs and task update.
knc6 Jan 28, 2022
b810256
Add master super.
knc6 Jan 28, 2022
8f82ef0
Add master super.
knc6 Jan 28, 2022
e3c5458
Lint fix.
knc6 Jan 28, 2022
7ef4382
Lint fix.
knc6 Jan 28, 2022
b714e4c
Minor fix.
knc6 Jan 28, 2022
b8e198c
ET update.
knc6 Jan 30, 2022
10e7549
Fix ET test.
knc6 Jan 30, 2022
e07587e
Update sanitize atoms.
knc6 Feb 9, 2022
195c8dd
Additonal checks on supercond.
knc6 Feb 17, 2022
9c4b27b
Debye bug fix.
knc6 Mar 10, 2022
438be9c
Pressure in QE Super.
knc6 Apr 3, 2022
bf1ec93
Version fix, publication update, supercond workflow update.
knc6 May 6, 2022
aa0e4bf
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 May 6, 2022
4606643
Lint fix.
knc6 May 6, 2022
df68f73
Tensorboard fix.
knc6 May 6, 2022
6ab83f1
Tensorboard fix.
knc6 May 6, 2022
e508317
Tensorboard fix.
knc6 May 6, 2022
14ec9d5
Melting temp fix.
knc6 May 6, 2022
b3ac2ad
Update vasp.py (#234)
wines1 May 6, 2022
0459156
Local tetra tmp.
knc6 May 6, 2022
7f29ffa
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 May 6, 2022
ded0cb0
Version update.
knc6 May 6, 2022
27365a8
Merge branch 'master' into develop
knc6 May 7, 2022
fad7aea
Lint fix.
knc6 May 7, 2022
304d411
HSE06
knc6 May 7, 2022
dd5ca8c
Tmp.
knc6 May 11, 2022
ca42f2c
Merge branch 'develop' of https://github.com/usnistgov/jarvis into de…
knc6 May 11, 2022
8780e43
Vacancy update, Optimade structureand other minor lint updates.
knc6 May 21, 2022
ea609a5
STEM pytest fix.
knc6 May 21, 2022
2338d18
Merge branch 'master' into develop
knc6 May 21, 2022
bd6935f
Minor lint fix.
knc6 May 21, 2022
684f662
Fixed selectrive dynamics issue in Poscar, force reading for single a…
knc6 Jul 18, 2022
0a9e7ad
Merge branch 'master' into develop
knc6 Jul 18, 2022
b1d82bd
Lint fix.
knc6 Jul 18, 2022
9a0be74
Added phononDos class.
knc6 Aug 23, 2022
d0eb71d
fix pytorch UserWarning in build_undirected_edgedata() (#243)
janosh Aug 25, 2022
e081c62
Add PhaseDiagram.
knc6 Aug 28, 2022
f2ea684
Add PhaseDiagram.
knc6 Aug 28, 2022
5e8fa2e
PhaseDiagram update.
knc6 Aug 28, 2022
76514c1
STM image pytest increase, requirements upgrade.
knc6 Aug 28, 2022
fdf773b
STM image pytest increase, requirements upgrade.
knc6 Aug 28, 2022
04b18ef
STM image pytest increase, requirements upgrade.
knc6 Aug 28, 2022
34a547d
Compare atoms, get spg info directly from atoms.
knc6 Aug 28, 2022
e903e15
Merge branch 'master' into develop
knc6 Aug 28, 2022
27f5982
Flake8 fix.
knc6 Aug 28, 2022
238d4f0
Update publications.rst
knc6 Aug 28, 2022
33bbf5c
Update qiskit.
knc6 Sep 17, 2022
a24453f
Update qiskit.
knc6 Sep 17, 2022
0a82c1e
Update test_hermsolver.py
knc6 Sep 17, 2022
8ebf208
FIix qiskit DOS.
knc6 Sep 17, 2022
a0830e5
Update test_hermsolver.py
knc6 Sep 17, 2022
e51c1ce
Merge branch 'master' into develop
knc6 Sep 17, 2022
65b1251
Fix linting.
knc6 Sep 17, 2022
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15 changes: 0 additions & 15 deletions DatasetSummary.rst

This file was deleted.

17 changes: 9 additions & 8 deletions dev-requirements.txt
Original file line number Diff line number Diff line change
Expand Up @@ -64,7 +64,7 @@ multitasking==0.0.10
networkx==2.6.3
ntlm-auth==1.5.0
numpy==1.22.0
oauthlib==3.1.1
oauthlib==3.2.1
opencv-python==4.5.4.60
opt-einsum==3.3.0
packaging==21.3
Expand Down Expand Up @@ -95,12 +95,13 @@ python-dateutil==2.8.2
pytz==2021.3
PyWavelets==1.2.0
PyYAML==6.0
qiskit==0.30.1
qiskit-aer==0.9.0
qiskit-aqua==0.9.5
qiskit-ibmq-provider==0.16.0
qiskit-ignis==0.6.0
qiskit-terra==0.18.3
qiskit
#qiskit==0.30.1
#qiskit-aer==0.9.0
#qiskit-aqua==0.9.5
#qiskit-ibmq-provider==0.16.0
#qiskit-ignis==0.6.0
#qiskit-terra==0.18.3
Quandl==3.7.0
requests==2.26.0
requests-ntlm==1.1.0
Expand Down Expand Up @@ -148,4 +149,4 @@ Werkzeug==2.0.2
wrapt==1.13.3
xmltodict==0.12.0
yfinance==0.1.67
zipp==3.6.0
zipp==3.6.0
17 changes: 9 additions & 8 deletions docs/requirements.txt
Original file line number Diff line number Diff line change
Expand Up @@ -65,7 +65,7 @@ multitasking==0.0.10
networkx==2.6.3
ntlm-auth==1.5.0
numpy==1.22.0
oauthlib==3.1.1
oauthlib==3.2.1
opencv-python==4.5.4.60
opt-einsum==3.3.0
packaging==21.3
Expand Down Expand Up @@ -96,12 +96,13 @@ python-dateutil==2.8.2
pytz==2021.3
PyWavelets==1.2.0
PyYAML==6.0
qiskit==0.30.1
qiskit-aer==0.9.0
qiskit-aqua==0.9.5
qiskit-ibmq-provider==0.16.0
qiskit-ignis==0.6.0
qiskit-terra==0.18.3
qiskit
#qiskit==0.30.1
#qiskit-aer==0.9.0
#qiskit-aqua==0.9.5
#qiskit-ibmq-provider==0.16.0
#qiskit-ignis==0.6.0
#qiskit-terra==0.18.3
Quandl==3.7.0
requests==2.26.0
requests-ntlm==1.1.0
Expand Down Expand Up @@ -150,4 +151,4 @@ Werkzeug==2.0.2
wrapt==1.13.3
xmltodict==0.12.0
yfinance==0.1.67
zipp==3.6.0
zipp==3.6.0
6 changes: 4 additions & 2 deletions docs/source/publications.rst
Original file line number Diff line number Diff line change
Expand Up @@ -76,11 +76,13 @@ JARVIS-ML related

[32. Rapid Prediction of Phonon Structure and Properties using an Atomistic Line Graph Neural Network (ALIGNN)](https://arxiv.org/abs/2207.12510)

[33. Unified Graph Neural Network Force-field for the Periodic Table](https://arxiv.org/abs/2209.05554)

JARVIS-QC related
-----------------------------------------------------
[33. Quantum Computation for Predicting Electron and Phonon Properties of Solids., J. Phys.: Cond. Matt.](https://iopscience.iop.org/article/10.1088/1361-648X/ac1154)
[34. Quantum Computation for Predicting Electron and Phonon Properties of Solids., J. Phys.: Cond. Matt.](https://iopscience.iop.org/article/10.1088/1361-648X/ac1154)


JARVIS-QETB related
-----------------------------------------------------
[34. Fast and Accurate Prediction of Material Properties with Three-Body Tight-Binding Model for the Periodic Table](https://arxiv.org/abs/2112.11585)
[35. Fast and Accurate Prediction of Material Properties with Three-Body Tight-Binding Model for the Periodic Table](https://arxiv.org/abs/2112.11585)
2 changes: 1 addition & 1 deletion jarvis/__init__.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
"""Version number."""
__version__ = "2022.08.27"
__version__ = "2022.09.16"

import os

Expand Down
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