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Remove database generation from main function #21

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merged 19 commits into from
Jul 12, 2024
Merged

Remove database generation from main function #21

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6e369ef
Refactored main function to pass config.ini as argument, instead of a…
brendanreardon Jul 4, 2024
670d704
Test revisions in progress
brendanreardon Jul 4, 2024
b4520ee
Regression tests match
brendanreardon Jul 10, 2024
9e67668
1 unit test still failing
brendanreardon Jul 10, 2024
367374b
Annotator unit test resolved
brendanreardon Jul 10, 2024
b7e3ff9
Added time to default output folder from run_example
brendanreardon Jul 10, 2024
92e9759
Update to example actionable output
brendanreardon Jul 10, 2024
8dba89f
Moved datasources to root dir of repo
brendanreardon Jul 10, 2024
abdd8a0
removed
brendanreardon Jul 10, 2024
d412bda
Removed deconstructSigs R wrapper
brendanreardon Jul 10, 2024
64a22a7
Removed deconstructSigs wrapper
brendanreardon Jul 10, 2024
b92c27b
Updated documentation
brendanreardon Jul 10, 2024
7a34c9d
Increased minor version of algorithm
brendanreardon Jul 10, 2024
bd7d377
Removed commented out code
brendanreardon Jul 10, 2024
40bcbb7
Removed additional commented code
brendanreardon Jul 10, 2024
d69eaa6
Removed unused ini reader
brendanreardon Jul 10, 2024
6ec4477
just kidding
brendanreardon Jul 10, 2024
3e400bf
Set extended interpolation to True for db loading
brendanreardon Jul 10, 2024
5e5d773
revised input args for simplified input
brendanreardon Jul 11, 2024
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0 moalmanac/datasources/README.md → datasources/README.md
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0 ...asources/oncotree/oncotree.2023-03-09.txt → datasources/oncotree/oncotree.2023-03-09.txt
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0 moalmanac/datasources/preclinical/README.md → datasources/preclinical/README.md
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44 changes: 22 additions & 22 deletions example_output/example_output.actionable.txt
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32 changes: 26 additions & 6 deletions moalmanac/run_example.py
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