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Release 0.7.0
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@simonvh simonvh released this 18 Nov 13:10
· 377 commits to master since this release
0.7.0
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[0.7.0] - 2019-11-18

Added

  • Direct downloading from url through url provider.
  • Added --force flag. Files will no longer be overwritten by default.
  • Provider specific options:
    • --ensembl-version: specify release version.
    • --ensembl-toplevel: by default, genomepy install will search for primary assemblies.
      This flag will only download toplevel assemblies.
  • Added STAR index plugin

Changed

  • Providers are now case-insensitive.
  • Extended testing.
  • Increased minimal Python version to 3.6.
  • Removed gaps from plugins, added gaps to core functionality.

Fixed

  • bugfix: NCBI will show all versions of an assembly (will no longer filter on BioSample ID, instead filters on asm_name).
  • fix: gaps file will be generated when needed.
Assets 3
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