Merge branch 'autogeneration-flint-headers' into sage_all_modularization

.ci/create-changes-html.sh

@@ -62,21 +62,27 @@ for block in diff_blocks:
     match = re.search(r'^diff --git a/(.*) b/\1', block, flags=re.MULTILINE)
     if match:
         doc = match.group(1)
-        path = 'html/' + doc
         file_path = os.path.join('$DOC_REPOSITORY', doc)
-        with open(file_path, 'r') as file:
-            content = file.readlines()
+        try:
+            with open(file_path, 'r') as file:
+                content = file.readlines()
+        except FileNotFoundError:
+            content = []
         count = 0
         for line in block.splitlines():
             if line.startswith('@@ -'):
-                line_number = int(re.search(r'@@ -(\d+)', line).group(1))
-                for i in range(line_number, -1, -1):
-                    if content[i].startswith('<'):
-                        count += 1
-                        content[i] = f'<span id="hunk{count}" style="visibility: hidden;"></span>' + content[i]
-                        break
-        with open(file_path, 'w') as file:
-            file.writelines(content)
+                search_result = re.search(r'@@ -(\d+),(\d+) \+(\d+),(\d+)', line)
+                if search_result:
+                    line_number = int(search_result.group(3))
+                    for i in range(line_number - 1, -1, -1):
+                        if content[i].startswith('<'):
+                            count += 1
+                            content[i] = f'<span id="hunk{count}" style="visibility: hidden;"></span>' + content[i]
+                            break
+        if content:
+            with open(file_path, 'w') as file:
+                file.writelines(content)
+        path = 'html/' + doc
         hunks = '&nbsp;'.join(f'<a href="{path}#hunk{i+1}" class="hunk" target="_blank">#{i + 1}</a>' for i in range(count))
         out_blocks.append(f'<p class="diff"><a href="{path}">{doc}</a>&nbsp;' + hunks + '&emsp;</p>'
                             + '\n<pre><code class="language-diff">'

.github/sync_labels.py

@@ -141,6 +141,7 @@ def __init__(self, url, actor):
         self._commits = None
         self._commit_date = None
         self._bot_login = None
+        self._gh_version = None
 
         s = url.split('/')
         self._owner = s[3]
@@ -235,13 +236,30 @@ def bot_login(self):
         """
         if self._bot_login:
             return self._bot_login
-        cmd = 'gh auth status'
         from subprocess import run
+        cmd = 'gh version'
+        capt = run(cmd, shell=True, capture_output=True)
+        self._gh_version = str(capt.stdout).split('\\n')[0]
+        info('version: %s' % self._gh_version)
+        cmd = 'gh auth status'
         capt = run(cmd, shell=True, capture_output=True)
-        l = str(capt.stderr).split()
-        if not 'as' in l:
-            l = str(capt.stdout).split()
-        self._bot_login = l[l.index('as')+1]
+        errtxt = str(capt.stderr)
+        outtxt = str(capt.stdout)
+        debug('auth status err: %s' % errtxt)
+        debug('auth status out: %s' % outtxt)
+        def read_login(txt, position_mark):
+            for t in txt:
+                for p in position_mark:
+                    # the output text has changed from as to account
+                    # around version 2.40.0
+                    l = t.split()
+                    if p in l:
+                        return l[l.index(p)+1]
+        self._bot_login = read_login([errtxt, outtxt], ['account', 'as'])
+        if not self._bot_login:
+            self._bot_login = default_bot
+            warning('Bot is unknown')
+            return self._bot_login
         if self._bot_login.endswith('[bot]'):
             self._bot_login = self._bot_login.split('[bot]')[0]
         info('Bot is %s' % self._bot_login)

.github/workflows/ci-conda-known-test-failures.json

@@ -0,0 +1,53 @@
+{
+    "sage_setup.clean": {
+        "failed": true
+    },
+    "sage.combinat.cluster_algebra_quiver.quiver": {
+        "failed": true
+    },
+    "sage.geometry.cone": {
+        "failed": true
+    },
+    "sage.groups.matrix_gps.finitely_generated_gap": {
+        "failed": true
+    },
+    "sage.interfaces.expect": {
+        "failed": true
+    },
+    "sage.libs.gap.element": {
+        "failed": true
+    },
+    "sage.libs.singular.singular": {
+        "failed": true
+    },
+    "sage.matrix.matrix2": {
+        "failed": true
+    },
+    "sage.matrix.matrix_integer_sparse": {
+        "failed": true
+    },
+    "sage.misc.lazy_import": {
+        "failed": true
+    },
+    "sage.misc.weak_dict": {
+        "failed": true
+    },
+    "sage.modular.modform.l_series_gross_zagier": {
+        "failed": true
+    },
+    "sage.rings.function_field.drinfeld_modules.morphism": {
+        "failed": true
+    },
+    "sage.rings.polynomial.multi_polynomial_ideal": {
+        "failed": true
+    },
+    "sage.rings.polynomial.multi_polynomial_libsingular": {
+        "failed": true
+    },
+    "sage.rings.polynomial.skew_polynomial_finite_field": {
+        "failed": true
+    },
+    "sage.tests.gap_packages": {
+        "failed": true
+    }
+}

.github/workflows/ci-conda.yml

@@ -21,8 +21,6 @@ jobs:
     runs-on: ${{ matrix.os }}
 
     strategy:
-      fail-fast: ${{ github.event_name == 'pull_request' }}
-      max-parallel: ${{ github.event_name == 'pull_request' && 2 || 6 }}
       matrix:
         os: [ubuntu-latest, macos-latest]
         python: ['3.9', '3.10', '3.11']
@@ -94,7 +92,7 @@ jobs:
       - name: Test
         if: success() || failure()
         shell: bash -l {0}
-        run: ./sage -t --all -p0
+        run: ./sage -t --all --baseline-stats-path=.github/workflows/ci-conda-known-test-failures.json -p0
 
       - name: Print logs
         if: always()

.github/workflows/doc-build-pdf.yml

@@ -57,7 +57,7 @@ jobs:
           export PATH="build/bin:$PATH"
           eval $(sage-print-system-package-command auto update)
           eval $(sage-print-system-package-command auto --yes --no-install-recommends install zip)
-          eval $(sage-print-system-package-command auto --spkg --yes --no-install-recommends install git texlive)
+          eval $(sage-print-system-package-command auto --spkg --yes --no-install-recommends install git texlive texlive_luatex free_fonts xindy)
 
       - name: Add prebuilt tree as a worktree
         id: worktree

.github/workflows/doc-build.yml

@@ -161,7 +161,7 @@ jobs:
           export PATH="build/bin:$PATH"
           eval $(sage-print-system-package-command auto update)
           eval $(sage-print-system-package-command auto --yes --no-install-recommends install zip)
-          eval $(sage-print-system-package-command auto --spkg --yes --no-install-recommends install git texlive)
+          eval $(sage-print-system-package-command auto --spkg --yes --no-install-recommends install git texlive texlive_luatex free_fonts xindy)
           export SAGE_USE_CDNS=yes
           export SAGE_LIVE_DOC=yes
           export SAGE_JUPYTER_SERVER=binder:sagemath/sage-binder-env/dev

.github/workflows/extract-sage-local.sh

@@ -8,7 +8,6 @@ fi
 # Show all tar files
 ls -l $*
 
-# Cygwin note: We specifically use the cygwin tar so that symlinks are saved/restored correctly on Windows.
 for a in $*; do
     echo Extracting $a
     (cd / && tar xf -) < $a
@@ -33,10 +32,3 @@ fi
 
 # Show how we are doing on free space.
 df -h
-
-# Rebase!
-case "$(uname)" in
-    CYGWIN*)
-        exec src/bin/sage-rebase.sh --all "$SAGE_LOCAL"
-        ;;
-esac

CITATION.cff

@@ -4,8 +4,8 @@ title: SageMath
 abstract: SageMath is a free open-source mathematics software system.
 authors:
 - name: "The SageMath Developers"
-version: 10.3.beta1
+version: 10.3.beta4
 doi: 10.5281/zenodo.593563
-date-released: 2023-12-10
+date-released: 2023-12-26
 repository-code: "https://github.com/sagemath/sage"
 url: "https://www.sagemath.org/"