Allow SAM-style flags to be passed through to output from FASTQ comments #1711
Triggered via pull request
November 23, 2024 00:47
jeizenga
Status
Failure
Total duration
24m 56s
Artifacts
–
Annotations
1 error and 8 warnings
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Test on Mac
Process completed with exit code 2.
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Test on Mac
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
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Test on Mac
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Test on Mac
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/cache@v2, actions/checkout@v2, actions/setup-node@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Test on Mac
The following openssl@3 configuration files have not been removed!
If desired, remove them manually with `rm -rf`:
/opt/homebrew/etc/openssl@3
/opt/homebrew/etc/openssl@3/cert.pem
/opt/homebrew/etc/openssl@3/certs
/opt/homebrew/etc/openssl@3/certs/.keepme
/opt/homebrew/etc/openssl@3/ct_log_list.cnf
/opt/homebrew/etc/openssl@3/ct_log_list.cnf.dist
/opt/homebrew/etc/openssl@3/misc
/opt/homebrew/etc/openssl@3/misc/CA.pl
/opt/homebrew/etc/openssl@3/misc/tsget
/opt/homebrew/etc/openssl@3/misc/tsget.pl
/opt/homebrew/etc/openssl@3/openssl.cnf
/opt/homebrew/etc/openssl@3/openssl.cnf.dist
/opt/homebrew/etc/openssl@3/private
/opt/homebrew/etc/openssl@3/private/.keepme
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Test on Mac
The following may be openssl@3 configuration files and have not been removed!
If desired, remove them manually with `rm -rf`:
/opt/homebrew/etc/openssl@1.1
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Test on Mac
The following ca-certificates configuration files have not been removed!
If desired, remove them manually with `rm -rf`:
/opt/homebrew/etc/ca-certificates
/opt/homebrew/etc/ca-certificates/cert.pem
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Test on Mac
protobuf 28.3 is already installed and up-to-date.
To reinstall 28.3, run:
brew reinstall protobuf
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Test on Mac
You have uncommitted modifications to Homebrew/homebrew-core.
If this is a surprise to you, then you should stash these modifications.
Stashing returns Homebrew to a pristine state but can be undone
should you later need to do so for some reason.
cd /opt/homebrew/Library/Taps/homebrew/homebrew-core && git stash -u && git clean -d -f
Uncommitted files:
M Formula/o/openssl@1.1.rb
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