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vg 1.61.0 - Plodio

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@adamnovak adamnovak released this 04 Nov 19:17
· 29 commits to master since this release
v1.61.0
cb82ebb
This commit was created on github.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
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Download for Linux

Don't forget to mark the static binary executable:

chmod +x vg

Docker Image: quay.io/vgteam/vg:v1.61.0

Buildable Source Tarball: vg-v1.61.0.tar.gz

Includes source for vg and all submodules. Use this instead of Github's "Source Code" downloads; those will not build as they do not include code for bundled dependencies that the vg build process needs.

This release includes:

  • Changed the protocol of the elfutils submodule from git:// to https://
  • Set snarl distance to 0 in path normalizer now that distance index is fixed.
  • GCSA indexing now checks for I/O errors on temporary kmer files.
  • make get-deps can no longer demand you set a timezone even when DEBIAN_FRONTEND=noninteractive in the calling shell.
  • vg chunk can now reference-index particular haplotype paths when requested.
  • vg paths -o added to apply a ReferencePathOverlayHelper before looking at the paths.
  • Mac CI now uses macOS 15 base image.
  • source_me.sh is no longer needed.
  • fix validate bug on protobuf graphs
  • vg surject --prune-low-cplx should no longer assess different contexts for different orientations of the same read, and should properly detect short tail anchors.
  • sublinear-Li-Stephens now builds with the same compiler as the rest of the vg build
  • vg rna can now output a haplotypes GBWT with node IDs matching the spliced graph

Updated Submodules

The libbdsg, sdsl-lite, and sublinear-Li-Stephens submodules have been updated.

The elfutils submodule URL has changed; make sure to git submodule sync.

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