Add hg19 profile

Currently this only used by scenic tool
vib-singlecell-nf · Apr 17, 2020 · 38c117f · 38c117f
1 parent 69bd103
commit 38c117f
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diff --git a/conf/genomes/hg19.config b/conf/genomes/hg19.config
@@ -0,0 +1,8 @@
+params {
+    global {
+        species = 'human'
+        genome {
+            assembly = 'hg19'
+        }
+    }
+}
diff --git a/nextflow.config b/nextflow.config
@@ -245,6 +245,11 @@ profiles {
         includeConfig 'conf/genomes/hg38.config'
     }
 
+    hg19 {
+        includeConfig 'src/scenic/conf/min/tfs/human-v0.0.1.config'
+        includeConfig 'conf/genomes/hg19.config'
+    }
+
     // feature profiles:
 
     pcacv {