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The Scanpy docker image contains h5py 2.10.0 #12

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cflerin opened this issue Oct 11, 2019 · 0 comments
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The Scanpy docker image contains h5py 2.10.0 #12

cflerin opened this issue Oct 11, 2019 · 0 comments
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@cflerin
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cflerin commented Oct 11, 2019

This is in dweemx/sctx-scanpy:0.2.0. There is a Scanpy issue about this and it breaks compatibility with adata files generated with the older h5ad package.

We should be locking all package versions with a requirements.txt file, as in the pySCENIC Dockerfile.
@cflerin cflerin added the bug Something isn't working label Oct 11, 2019
@cflerin cflerin mentioned this issue Oct 15, 2019
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@cflerin cflerin closed this as completed Oct 23, 2019
KrisDavie pushed a commit that referenced this issue Dec 7, 2020
@dweemx
Merge pull request #12 from vib-singlecell-nf/develop
124363c 
Develop
KrisDavie pushed a commit that referenced this issue Dec 7, 2020
@dweemx
Merge pull request #12 from vib-singlecell-nf/develop
2040ea8 
Fix bug and improve report when parameter exploration mode is on
KrisDavie pushed a commit that referenced this issue Dec 7, 2020
@dweemx
Merge pull request #12 from vib-singlecell-nf/develop
0eaee03 
Develop
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