A plugin to enable the use of the MMLigner pairwise structural alignment program from within Yasara. Web address of the MMligner site to download the program: http://lcb.infotech.monash.edu.au/mmligner/
Please cite the article when publishing results from this plugin: J. H. Collier, L. Allison, A. M. Lesk, P. J. Stuckey, M. Garcia de la Banda & A. S. Konagurthu Statistical inference of protein structural alignments using information and compression Bioinformatics. 33(7):1005-1013.
- Download the binary of MMligner from http://lcb.infotech.monash.edu.au/mmligner/
- Save it in a folder of your choice
- Download the plugin and unzip it in the
yasara installation folder/plg
folder. - Start YASARA
- Load any PDB file into YASARA
- Configure the MMligner plugin via Analyse > Align > Configure MMligner plugin
- Select the binary MMligner in the subsequent dialogue
- Load two PDD files into YASARA
- Align the structures via Analyse > Align > Molecules with MMligner
- Select the target structure you would like to align the other molecule onto
- Select the second structure
- Wait until the alignment has succeeded
James Collier, Alexander Botzki. VIB