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@colomoto @sysbio-curie @PhysiBoSS @PerMedCoE

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vincent-noel/README.md

Hi there 👋

I'm a research scientist in the Computational Systems Biology of Cancer team at Institut Curie, Paris. My main research focus is the modelling of biological systems. I'm developing multiscale models, which integrate intracellular signalling into the simulation of biological tissues. I'm also developing methods to personalize these models and to make them specific to each patient, to produce personalized predictions.

I've been the lead developer of MaBoSS, a continuous-time Boolean modelling framework, for more than 5 years. I've been working on pyMaBoSS, its Python bindings, and I'm developing cMaBoSS, its new Python bindings using the Python C API. I also developed WebMaBoSS, a web interface for getting started with MaBoSS, ensembleMaBoSS to simulate ensembles of Boolean networks, and PopMaBoSS, a multicellular pathway modelling framework.

Recently, I've been the lead developer of PhysiBoSS, a PhysiCell addon for integrating intracellular signalling as a Boolean network. I also contributed to PhysiMeSS, an addon for modelling fibres, and PhysiCell Studio, the graphical interface for PhysiCell.

Pinned Loading

  1. MaBoSS-env-2.0 MaBoSS-env-2.0 Public

    Forked from maboss-bkmc/MaBoSS

    C++

  2. pyMaBoSS pyMaBoSS Public

    Forked from colomoto/pyMaBoSS

    python interface for the MaBoSS software

    Jupyter Notebook

  3. WebMaBoSS WebMaBoSS Public

    A web interface for MaBoSS modeling

    JavaScript 1 3

  4. PhysiMESS PhysiMESS Public

    Forked from CicelyKrystyna/PhysiMESS

    PhysiCell MicroEnvironment Structure Simulation

    C++ 1

  5. PhysiCell-Studio PhysiCell-Studio Public

    Forked from PhysiCell-Tools/PhysiCell-Studio

    GUI application to build a PhysiCell model

    Python 1

  6. PhysiCell PhysiCell Public

    Forked from MathCancer/PhysiCell

    PhysiCell: Scientist end users should use latest release! Bugfixes should be submitted to the development branch.

    Jupyter Notebook