VCell's Introduction to Analysing Simulation Results in Fiji

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Virtual Cell is a comprehensive platform for modeling cell biological systems, and produces simulation results for these systems.

As another analysis avenue we have added the new N5 export file which takes spatial simulation results, and allow it to be accessed remotely. This plugin can then read these simulation results stored on our servers in the N5 format, and open them within Fiji.

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Installation

In Fiji:

1. Click on Help -> Update to get plugin management GUI
2. In the management GUI click Manage Update Sites, search "VCell", and check it to install
3. After clicking Apply and Close restart Fiji, then 'VCell View Simulation Results' should be in your plugins menu.