RNASeq_Analysis

RNASeq analysis preformed as part of the module QBio304: Applied Bioinformatics

R script templates taken from https://github.com/NAMlab/QBIO

Source study: https://www.researchgate.net/publication/359037824_Metabolite_Profiling_and_Transcriptome_Analysis_Revealed_the_Conserved_Transcriptional_Regulation_Mechanism_of_Caffeine_Biosynthesis_in_Tea_and_Coffee_Plants

Raw Data:
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA798825
https://www.ncbi.nlm.nih.gov/sra/SRX13836512
https://www.ncbi.nlm.nih.gov/sra/SRX13836513
https://www.ncbi.nlm.nih.gov/sra/SRX13836514
https://www.ncbi.nlm.nih.gov/sra/SRX13836515
https://www.ncbi.nlm.nih.gov/sra/SRX13836506
https://www.ncbi.nlm.nih.gov/sra/SRX13836507
https://www.ncbi.nlm.nih.gov/sra/SRX13836508
https://www.ncbi.nlm.nih.gov/sra/SRX13836509

Coffea Canephora ensembl genome: https://plants.ensembl.org/Coffea_canephora/Info/Index