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Rearrange include list in module definition so that "defintions.jl" is above "spatial_structure.jl" #12

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Rearrange include list in module definition so that "defintions.jl" is above "spatial_structure.jl" #12

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66839ca
Added some rearrangements to when definitions is called
fieldofnodes Oct 7, 2024
af2daed
Added some rearrangements to when definitions is called
fieldofnodes Oct 7, 2024
621d385
Added some rearrangements to when definitions is called
fieldofnodes Oct 7, 2024
b1d2409
Added some rearrangements to when definitions is called
fieldofnodes Oct 7, 2024
f0424cf
Added some rearrangements to when definitions is called
fieldofnodes Oct 7, 2024
579d8f7
Added some rearrangements to when definitions is called
fieldofnodes Oct 7, 2024
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13 changes: 9 additions & 4 deletions src/GeneDrive.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -21,18 +21,23 @@ import DataFrames
# Files
#####################
# TODO: Random.seed!(123)


include("genetics.jl")


include("temperature.jl")
include("temperature_responses.jl")

include("life_stages.jl")
include("genetics.jl")
include("life_stages.jl")
include("organisms.jl")
include("definitions.jl")

include("spatial_structure.jl")
include("exogenous_change.jl")

include("accessors.jl")
include("definitions.jl")



include("initialize.jl")
include("population_dynamics.jl")
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57 changes: 36 additions & 21 deletions src/definitions.jl
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Expand Up @@ -2,26 +2,41 @@
# Mappings #
################################################################################

const life_stage_key_map =
Dict("Egg" => Egg, "Larva" => Larva, "Pupa" => Pupa, "Male" => Male, "Female" => Female)

const genetics_key_map = Dict(
"WW" => WW,
"ww" => ww,
# end Wolbachia
"HH" => HH,
"Hh" => Hh,
"HR" => HR,
"hh" => hh,
"hR" => hR,
"RR" => RR,
# end single-locus homing gene drive (HGD/MCR)
"WR" => WR,
# end RIDL (total = WW, WR, RR)
"AA" => AA,
"Aa" => Aa,
"aa" => aa,
# end Mendelian
)


const life_stage_key_map =

Dict(
"Egg" => Egg,
"Larva" => Larva,
"Pupa" => Pupa,
"Male" => Male,
"Female" => Female)

const genetics_key_map =
Dict(
"WW" => WW,
"ww" => ww,
# end Wolbachia
"HH" => HH,
"Hh" => Hh,
"HR" => HR,
"hh" => hh,
"hR" => hR,
"RR" => RR,
# end single-locus homing gene drive (HGD/MCR)
"WR" => WR,
# end RIDL (total = WW, WR, RR)
"AA" => AA,
"Aa" => Aa,
"aa" => aa,
# end Mendelian
)

const MALE_FEMALE_RELEASE_FRACTION = 0.5






5 changes: 5 additions & 0 deletions testing_genedrive.jl
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@@ -0,0 +1,5 @@
using Pkg
Pkg.activate(".")
include("src/GeneDrive.jl")
using .GeneDrive