add scripts to submit on cluster

README.md

@@ -27,8 +27,10 @@ they are currently in the different repository (translation code)
 - No money to test !!!
 
 ## Notes:
-- *Note that in cluster, when submit job, the environment may not load `.bashrc`, so need to add export command in job file:* 
-`example on job file`
+- *Note that in cluster, when submit job, the environment may not load `.bashrc`, so need to 
+load conda environment in job file:* 
+`source PATH_TO_ANNACONDA/anaconda3/etc/profile.d/conda.sh`
+- Activate environment (e.g py310): `conda activate py310`
 
 -------------------------------------
 ## Bugs

scripts/job_scripts/job_aci_mgc.sh

@@ -0,0 +1,18 @@
+#!/bin/bash
+## This bah script to run on mgc-nih allocation
+#PBS -N N200_CONFIDX
+#PBS -l walltime=24:00:00
+#PBS -A mgc_nih
+#PBS -l qos=mgc_nih
+#PBS -l pmem=2gb
+#PBS -j oe
+#PBS -l feature=rhel7
+#PBS -l nodes=1:ppn=1:gpus=1:shared:gc_t4
+
+cd $PBS_O_WORKDIR
+echo `pwd`
+
+source /storage/home/qvv5013/work/anaconda3/etc/profile.d/conda.sh
+
+python single_run_get_time_fQ.py -f control_cal_fQ.config
+

scripts/job_scripts/job_cyberlamp.sh

@@ -0,0 +1,16 @@
+#!/bin/bash
+## This bah script to run on default allocation
+#PBS -N cat_SETINDEX
+##PBS -r n
+#PBS -o output.out
+#PBS -e error.err
+#PBS -l nodes=1:ppn=1
+#PBS -l walltime=8:00:00:00
+##PBS -j oe
+#PBS -A cyberlamp -l qos=cl_open
+cd $PBS_O_WORKDIR
+
+cur_dir=`pwd`
+source /storage/home/qvv5013/work/anaconda3/etc/profile.d/conda.sh
+#conda activate py37
+python single_run_get_time_fQ.py -f control_cal_fQ.config

scripts/job_scripts/job_plgrid_gpu.sh

@@ -0,0 +1,17 @@
+#!/bin/bash -l
+#SBATCH -J cat_SETINDEX
+#SBATCH -N 1
+#SBATCH --ntasks-per-node=1
+#SBATCH --mem-per-cpu=5GB
+#SBATCH --time=72:00:00 
+#SBATCH -A plgribo3gpu
+#SBATCH --gres=gpu
+#SBATCH -p plgrid-gpu
+#SBATCH --output=output.out
+#SBATCH --error=error.err
+cd $SLURM_SUBMIT_DIR
+srun /bin/hostname
+
+conda activate py310
+python single_run_get_time_fQ.py -f control_cal_fQ.config
+