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Bioc ExperimentalDataNews
The ExperimentalDataNews blog brings out the huge value of ExperimentData packages in the Bioconductor ecosystem. These packages illustrate effectiveness of Bioc data structures in making outputs of influential experiments readily available for reanalysis or extended analysis, and for integration with other experiments. This page will give a table of contents, annotated with brief commentary on data structure strategies employed in key contributions.
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dsQTL -- illustrates use of RangedSummarizedExperiment for DnaseI hypersensitivity (DHS) scoring on 1.4 million 100bp tiles, and describes how to 1000 genomes genotypes to identify genetic loci associated with DHS.
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geuvPack -- a RangedSummarizedExperiment for the FPKM of the first eQTL analysis of the GEUVADIS data (transcriptomics of Coriell cells from various HapMap populations).