GitHub - warmflasha/CellTracker60X: Cell identification from high magnification images

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Cell identification from high magnification images

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Name		Name	Last commit message	Last commit date
Latest commit History 215 Commits
ilastikmultpos		ilastikmultpos
ilastiksegmentation		ilastiksegmentation
integratedcode_fish		integratedcode_fish
3Dlblmask.m		3Dlblmask.m
DirInfo_TrackMicroCol.m		DirInfo_TrackMicroCol.m
FindPositionMasks.m		FindPositionMasks.m
GeneralScriptAN.m		GeneralScriptAN.m
GetDynamicColonyStats.m		GetDynamicColonyStats.m
GetDynamicColonyTraces.m		GetDynamicColonyTraces.m
GetNumberTimePointsAN.m		GetNumberTimePointsAN.m
GetZProjections_allPositionsAN.m		GetZProjections_allPositionsAN.m
GetZProjections_alltimesAN.m		GetZProjections_alltimesAN.m
IlastikplusWatershed_AN.m		IlastikplusWatershed_AN.m
IlastikplusWatershed_AW.m		IlastikplusWatershed_AW.m
IlastikplusWatershed_AWproj.m		IlastikplusWatershed_AWproj.m
Intensity_vs_ColSizeSelectImagesproduct.m		Intensity_vs_ColSizeSelectImagesproduct.m
MatchTrajectorywithColony.m		MatchTrajectorywithColony.m
MaxProjTimeGroupsAN.m		MaxProjTimeGroupsAN.m
MaxProjsimpleAN.m		MaxProjsimpleAN.m
Plot3DsegmentationResults.m		Plot3DsegmentationResults.m
PlotSignalingonImages.m		PlotSignalingonImages.m
Readfilefromtimestack.m		Readfilefromtimestack.m
RenameIlastikOutputFiles.m		RenameIlastikOutputFiles.m
Script_DynamicColonyAnalysis.m		Script_DynamicColonyAnalysis.m
Script_RunmicroCol60Xanalysis.m		Script_RunmicroCol60Xanalysis.m
TestScript60X.m		TestScript60X.m
TrackGroupuCol.m		TrackGroupuCol.m
TrackGroupuCol60X.m		TrackGroupuCol60X.m
Unmergetwonuclei.m		Unmergetwonuclei.m
UnmergetwonucleiGeneral.m		UnmergetwonucleiGeneral.m
WatershedsegmCytoplasm_AW.m		WatershedsegmCytoplasm_AW.m
averageImageInCircle.m		averageImageInCircle.m
checkboundaries.m		checkboundaries.m
circles2cells.m		circles2cells.m
getAndorFileNamenoTime.m		getAndorFileNamenoTime.m
getlastTfromlivecell.m		getlastTfromlivecell.m
getlivecellstats.m		getlivecellstats.m
getrawimgfiles.m		getrawimgfiles.m
getrawimgfilesselectZ.m		getrawimgfilesselectZ.m
grouplivetraces.m		grouplivetraces.m
histSignaling.m		histSignaling.m
histSignalingCol.m		histSignalingCol.m
imageregistratioscriptAN.m		imageregistratioscriptAN.m
lblmask_3Dnuc.m		lblmask_3Dnuc.m
matchCdx2andSignaling.m		matchCdx2andSignaling.m
matchLiveandFixedCOlonies.m		matchLiveandFixedCOlonies.m
maxalongX.m		maxalongX.m
maxalongY.m		maxalongY.m
montagetomultxy.m		montagetomultxy.m
newTrackParamAN.m		newTrackParamAN.m
nucCytoIlastik2peaks.m		nucCytoIlastik2peaks.m
nucCytoIlastik2peaksLoop.m		nucCytoIlastik2peaksLoop.m
nucCytoIlastik2peaks_3Dsegm.m		nucCytoIlastik2peaks_3Dsegm.m
nucOnlyIlastik2peaks_3Dsegm.m		nucOnlyIlastik2peaks_3Dsegm.m
plotcelltraces.m		plotcelltraces.m
plotcelltracesandFixedData.m		plotcelltracesandFixedData.m
plotselecteddata.m		plotselecteddata.m
potcelltraces.m		potcelltraces.m
primaryfilterAN.m		primaryfilterAN.m
readAndorDirectoryANmod.m		readAndorDirectoryANmod.m
readmaskfiles1.m		readmaskfiles1.m
registerMontageFluor.m		registerMontageFluor.m
runMicroColonyGrouping.m		runMicroColonyGrouping.m
runNucSegmentationIlastik.m		runNucSegmentationIlastik.m
rundataset3D.m		rundataset3D.m
rundataset3DLoop.m		rundataset3DLoop.m
rundataset3Donlynucsegm.m		rundataset3Donlynucsegm.m
runlivecell_newsegm.m		runlivecell_newsegm.m
runmaskoneANdata.m		runmaskoneANdata.m
runmaskoneANdataonlynucsegm.m		runmaskoneANdataonlynucsegm.m
sapnaScript.m		sapnaScript.m
secondaryfilterAN.m		secondaryfilterAN.m
setUserParam3DsegmentationAN.m		setUserParam3DsegmentationAN.m
setUserParamLiveImagingAN.m		setUserParamLiveImagingAN.m
simplebg.m		simplebg.m
smoothVAR.m		smoothVAR.m
smoothinditrace.m		smoothinditrace.m
smoothtrace.m		smoothtrace.m
testmergenuclei.m		testmergenuclei.m
traceobjectszTEST.m		traceobjectszTEST.m
traceobjectszdistinct.m		traceobjectszdistinct.m
trackingdata.m		trackingdata.m
transformpeaks.m		transformpeaks.m
transformpeaks2.m		transformpeaks2.m
untitled4.m		untitled4.m