Merge branch 'newObj' of https://github.com/welch-lab/liger into newObj #19
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: R | |
| on: | |
| push: | |
| branches: [ "master", "newObj" ] | |
| pull_request: | |
| branches: [ "master", "newObj" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up R ${{ matrix.r }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Install library on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install libhdf5-dev | |
| sudo apt-get install libglpk-dev | |
| sudo apt-get install pandoc | |
| - name: Install library on MacOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install hdf5 | |
| brew install pandoc | |
| - name: Install library on Windows | |
| if: runner.os == 'Windows' | |
| run: | | |
| choco install pandoc | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck", "covr")) | |
| remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning") | |
| shell: Rscript {0} | |
| - name: Run codecov | |
| run: | | |
| covr::codecov() | |
| shell: Rscript {0} | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |