The hsegHMM package requires the facets package, available at https://github.com/mskcc/facets.
Installation:
To install from Github, use the devtools R package:
devtools::install_github("wheelerb/hsegHMM/source", build_vignettes=TRUE)
Alternatively, download the package and follow the steps below.
Download hsegHMM_0.1.0.tar.gz (for Unix) or hsegHMM_0.1.0.zip (for Windows).
To install hsegHMM on Unix, enter the command (without the quotes) from a Unix prompt:
"R CMD INSTALL hsegHMM_0.1.0.tar.gz -l path_to_install_package"
To install on Windows, in the R GUI select "Packages", then select "Install package(s) from local files...", go to the folder where hsegHMM_0.1.0.zip is and select this file.