Merge pull request #50 from wjakethompson/overall-pvalues #165
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on: | |
push: | |
branches: [main, master] | |
pull_request: | |
branches: [main, master] | |
name: test-coverage | |
jobs: | |
test-coverage: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
extra-repositories: https://mc-stan.org/r-packages/ | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
cache-version: 3 | |
extra-packages: | | |
any::covr | |
github::stan-dev/cmdstanr | |
upgrade: 'TRUE' | |
needs: coverage | |
- name: Install cmdstan | |
run: | | |
cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
cmdstanr::install_cmdstan(cores = 2) | |
shell: Rscript {0} | |
- name: Test coverage | |
run: | | |
covr::codecov( | |
quiet = FALSE, | |
clean = FALSE, | |
line_exclusions = list("src/stanExports_gqs_loglik.h", | |
"src/stanExports_gqs_probs.h", | |
"src/stanExports_gqs_ppmc.h", | |
"src/stanExports_test_lcdm.h", | |
"src/stanExports_test_dina.h", | |
"src/stanExports_test_dino.h"), | |
install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") | |
) | |
shell: Rscript {0} | |
- name: Show testthat output | |
if: always() | |
run: | | |
## -------------------------------------------------------------------- | |
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Upload test results | |
if: failure() | |
uses: actions/upload-artifact@v3 | |
with: | |
name: coverage-test-failures | |
path: ${{ runner.temp }}/package |