Merge pull request #482 from ces/pacbio32

Allow for naming differences in unbarcoded bam files from SMRT Link deplexing
wtsi-npg · Dec 12, 2024 · 297fdb6 · 297fdb6
2 parents 46c5e66 + 866f48d
commit 297fdb6
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/lib/WTSI/NPG/HTS/PacBio/AnalysisPublisher.pm b/lib/WTSI/NPG/HTS/PacBio/AnalysisPublisher.pm
@@ -4,6 +4,7 @@ use namespace::autoclean;
 use English qw[-no_match_vars];
 use File::Basename;
 use File::Spec::Functions qw[catdir];
+use List::AllUtils qw[any];
 use JSON;
 use Moose;
 use MooseX::StrictConstructor;
@@ -399,8 +400,7 @@ sub _get_tag_name_from_fname {
 
 sub _is_allowed_fname {
   my ($self, $file, $fnames) = @_;
-  my @exists = grep { $file =~ m{[.] $_ [.]}smx } @{ $fnames };
-  return @exists == 1 ? 1 : 0;
+  return (any {  $file =~ m{[.] $_ [.]}smx  } @{ $fnames } );
 }
 
 sub _dest_path {

diff --git a/t/data/pacbio/analysis/0000019480/cromwell-job/call-lima/execution/mlwh_locations.json b/t/data/pacbio/analysis/0000019480/cromwell-job/call-lima/execution/mlwh_locations.json