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Fix indentation in AlnDataObjectTest
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@marcomoscasgr
marcomoscasgr committed Dec 10, 2024
1 parent 9e61010 commit 9d94306
Showing 1 changed file with 78 additions and 78 deletions.
156 changes: 78 additions & 78 deletions t/lib/WTSI/NPG/HTS/Illumina/AlnDataObjectTest.pm
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Original file line number Diff line number Diff line change
Expand Up @@ -714,38 +714,38 @@ sub update_secondary_metadata_tag0_no_spike_bact : Test(12) {
{attribute => $SAMPLE_PUBLIC_NAME, value => 'P73230-3018'},
{attribute => $SAMPLE_PUBLIC_NAME, value => 'SOIL'},
{attribute => $SAMPLE_UUID, value => 'a8b4ebaa-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b4f3ac-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b4fbae-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b503a6-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b50b9e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b51396-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b51ba2-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5239a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b52b92-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5338a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b53b82-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5437a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b54b7c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b55374-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b55b94-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5638c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b56bb6-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b573ae-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b57bb0-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b583a8-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b58b96-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5938e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b59b86-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5a37e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5ab6c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5b364-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5bb5c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5c35e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5cb4c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5d34e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5db46-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5e352-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5eb54-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b4f3ac-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b4fbae-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b503a6-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b50b9e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b51396-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b51ba2-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5239a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b52b92-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5338a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b53b82-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5437a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b54b7c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b55374-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b55b94-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5638c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b56bb6-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b573ae-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b57bb0-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b583a8-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b58b96-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5938e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b59b86-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5a37e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5ab6c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5b364-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5bb5c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5c35e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5cb4c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5d34e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5db46-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5e352-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5eb54-c628-11df-8e7f-00144f2062b0'},
{attribute => $STUDY_NAME,
value => 'Burkholderia pseudomallei diversity'},
{attribute => $STUDY_ACCESSION_NUMBER, value => 'ERP000251'},
Expand Down Expand Up @@ -971,40 +971,40 @@ sub update_secondary_metadata_tag0_spike_bact : Test(12) {
{attribute => $SAMPLE_PUBLIC_NAME, value => 'K11277244-293'},
{attribute => $SAMPLE_PUBLIC_NAME, value => 'P73230-3018'},
{attribute => $SAMPLE_PUBLIC_NAME, value => 'SOIL'},
{attribute => $SAMPLE_UUID, value => 'a8b4ebaa-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b4f3ac-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b4fbae-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b503a6-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b50b9e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b51396-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b51ba2-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5239a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b52b92-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5338a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b53b82-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5437a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b54b7c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b55374-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b55b94-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5638c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b56bb6-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b573ae-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b57bb0-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b583a8-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b58b96-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5938e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b59b86-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5a37e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5ab6c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5b364-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5bb5c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5c35e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5cb4c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5d34e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5db46-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5e352-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5eb54-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'd3a59c4c-c037-11e0-834c-00144f01a414'},
{attribute => $SAMPLE_UUID, value => 'a8b4ebaa-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b4f3ac-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b4fbae-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b503a6-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b50b9e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b51396-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b51ba2-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5239a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b52b92-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5338a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b53b82-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5437a-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b54b7c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b55374-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b55b94-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5638c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b56bb6-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b573ae-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b57bb0-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b583a8-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b58b96-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5938e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b59b86-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5a37e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5ab6c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5b364-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5bb5c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5c35e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5cb4c-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5d34e-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5db46-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5e352-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b5eb54-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'd3a59c4c-c037-11e0-834c-00144f01a414'},
{attribute => $STUDY_NAME,
value => 'Burkholderia pseudomallei diversity'},
{attribute => $STUDY_NAME,
Expand Down Expand Up @@ -1126,7 +1126,7 @@ sub update_secondary_metadata_tag1_spike_bact : Test(12) {
value => 'Burkholderia pseudomallei'},
{attribute => $SAMPLE_ID, value => '230889'},
{attribute => $SAMPLE_PUBLIC_NAME, value => '153.0'},
{attribute => $SAMPLE_UUID, value => 'a8b4ebaa-c628-11df-8e7f-00144f2062b0'},
{attribute => $SAMPLE_UUID, value => 'a8b4ebaa-c628-11df-8e7f-00144f2062b0'},
{attribute => $STUDY_NAME,
value => 'Burkholderia pseudomallei diversity'},
{attribute => $STUDY_ACCESSION_NUMBER, value => 'ERP000251'},
Expand Down Expand Up @@ -1203,10 +1203,10 @@ sub update_secondary_metadata_tag0_no_spike_human : Test(12) {
{attribute => $SAMPLE_SUPPLIER_NAME, value => '7R5'},
{attribute => $SAMPLE_SUPPLIER_NAME, value => '8AJ1'},
{attribute => $SAMPLE_SUPPLIER_NAME, value => '8R163'},
{attribute => $SAMPLE_UUID, value => 'd41d4a40-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd492a150-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd4ee2ed0-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd62d8ca0-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd41d4a40-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd492a150-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd4ee2ed0-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd62d8ca0-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $STUDY_NAME,
value => 'SEQCAP_Lebanon_LowCov-seq'},
{attribute => $STUDY_ACCESSION_NUMBER, value => 'EGAS00001002084'},
Expand Down Expand Up @@ -1287,11 +1287,11 @@ sub update_secondary_metadata_tag0_spike_human : Test(12) {
{attribute => $SAMPLE_SUPPLIER_NAME, value => '7R5'},
{attribute => $SAMPLE_SUPPLIER_NAME, value => '8AJ1'},
{attribute => $SAMPLE_SUPPLIER_NAME, value => '8R163'},
{attribute => $SAMPLE_UUID, value => 'd3a59c4c-c037-11e0-834c-00144f01a414'},
{attribute => $SAMPLE_UUID, value => 'd41d4a40-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd492a150-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd4ee2ed0-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd62d8ca0-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd3a59c4c-c037-11e0-834c-00144f01a414'},
{attribute => $SAMPLE_UUID, value => 'd41d4a40-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd492a150-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd4ee2ed0-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd62d8ca0-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $STUDY_NAME, value => 'Illumina Controls'},
{attribute => $STUDY_NAME,
value => 'SEQCAP_Lebanon_LowCov-seq'},
Expand Down Expand Up @@ -1353,7 +1353,7 @@ sub update_secondary_metadata_tag81_no_spike_human : Test(12) {
{attribute => $SAMPLE_DONOR_ID, value => 'T19PG5759041'},
{attribute => $SAMPLE_ID, value => '1877285'},
{attribute => $SAMPLE_SUPPLIER_NAME, value => '7R5'},
{attribute => $SAMPLE_UUID, value => 'd41d4a40-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd41d4a40-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $STUDY_NAME,
value => 'SEQCAP_Lebanon_LowCov-seq'},
{attribute => $STUDY_ACCESSION_NUMBER, value => 'EGAS00001002084'},
Expand Down Expand Up @@ -1412,7 +1412,7 @@ sub update_secondary_metadata_tag81_spike_human : Test(12) {
{attribute => $SAMPLE_DONOR_ID, value => 'T19PG5759041'},
{attribute => $SAMPLE_ID, value => '1877285'},
{attribute => $SAMPLE_SUPPLIER_NAME, value => '7R5'},
{attribute => $SAMPLE_UUID, value => 'd41d4a40-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $SAMPLE_UUID, value => 'd41d4a40-a521-11e3-8055-3c4a9275d6c6'},
{attribute => $STUDY_NAME,
value => 'SEQCAP_Lebanon_LowCov-seq'},
{attribute => $STUDY_ACCESSION_NUMBER, value => 'EGAS00001002084'},
Expand Down

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